Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37810 215 / 5e-64 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT5G37820 215 / 6e-64 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT4G18910 186 / 4e-53 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT1G31885 181 / 5e-51 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT1G77360 173 / 3e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19030 166 / 5e-46 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT2G34390 158 / 4e-43 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT1G71060 161 / 3e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10380 141 / 3e-37 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT1G80760 139 / 4e-36 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009123 [exp] 895 / 0 AT1G77360 156 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017633 [exp] 607 / 0 AT1G77360 183 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033591 [exp] 324 / 1e-105 AT1G77360 121 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033590 [exp] 254 / 3e-79 AT3G62470 98 / 2e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035999 [exp] 221 / 2e-66 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10029274 [exp] 190 / 6e-55 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10001588 [exp] 171 / 7e-45 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020929 [exp] 151 / 2e-40 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10001633 [exp] 152 / 9e-39 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126600 [exp] 550 / 0 AT1G77360 173 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G045800 [exp] 322 / 4e-102 AT1G77360 192 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G128200 [exp] 236 / 4e-72 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.010G112900 [exp] 224 / 1e-67 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.004G063000 [exp] 194 / 2e-56 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 193 / 4e-56 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.005G181900 [exp] 185 / 7e-51 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G083300 [exp] 158 / 2e-43 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G114700 [exp] 154 / 2e-39 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G097000 [exp] 147 / 2e-39 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028520 pacid=23166141 polypeptide=Lus10028520 locus=Lus10028520.g ID=Lus10028520.BGIv1.0 annot-version=v1.0 ATGGATTTAGAAGGCGGCGGCGGTGGTGGTTTCCGCCGCTCTCCCACGGCCACCGCTGTGGCCACCCCATATCCTGGATTTTGGACTTCTCCTGCTGTCG TTGAAACCATACAAAAGGTATCGGCAGAGTTAATAGGAACATATCTTCTCATACTGGTGGGATGCGGATCCGTCGCCGTCAACAGCATCTACGGCAAAGC CACGCCGCCAGGAGTAGCCGTCTGTTGGGGCTTTATAGTTACACTGTTGTCATATTCGGTGGGACATGTCTCCGGCGCACATTTCAATCCCGCCGTCACC CTCTCCGCCGCCGCCTTCCGTGGCTTTCCCCTCCGCCTGGTGCCGTGGTACATAGGGGTGCAAGTGTTGGGATCCATAGTAGCGAGCTGGTCGTTGGAGC TGTTCCTGGAGATAACGCCGTCATCGTATTTCGGGACAGTTCCGGCCGGTTCGGCAGCGCAATCTTTGTTCGCAGAGACGATTGCCACTTTTATTTTGCT CTTCGGCATCTCCGCCGCCTCCGCTGATAATTCCTCGGTTGGCGATCTTGGTCCTCTGCTAGTAGGAATGACTATATTGATGGATGTTCTTCTCGCAGGG CCAATATCGGGAGCGTCGATGAACCCAGCAAGAAGTATTGGGCCAGCAGTGGTTGGGCAGGGAGCGAATGGGCTATGGCTTGCTCATTTATCTTTCGGGG AAGACCAAAATTCCAAGTTCGTCACCGGCGCGGGTCAAAATGGAGAGTTGCCGCTACGACTTCCGCCACAACCAACGGCGGGACGACCATCTTCCCCAGC TCGGCTCGACTTCGCCATCCTCAAATCTGCGGCAGCACCACTCATCCCTTCGTTTCATCCCACCGTTTTCCCTTCATACACCGATATCCCCAATCTCCCT CCGAAAATAAAGCTCATCTGCGAAATCATCGCCACAACGCCGCCGATCGCCGTCGAGAGAGTCCTCGACGGCGCCGGAATCAGCGTAACACAGGCGGAGG CCGAGCAAGTTCTTAAGCTCTCTTATTCCTCTCCAGCCACTTCAGTGAAGTTCTTCCGGTGGAGTGGGTTGCGGCTCAGCGGTGGTCACTCCCCTTACGC CTGGAACCTAGTGGTTGACCTTCTCGGTAAGAATCGCCTCTTCGATGCAATGTGGGGCTCTGTCAAGTCCATGAGACTCGAAAGATTAGTTTCTTCAGCT ACTTTCGCTTCAATTTTCAGTAGCTATGTATCCGCTGGTAAGGTGAAGGAGGCTACTATGACTTTCGAAGTTATGGATCAATACGGCTGCAATCATGACA TTGTGGCATTGAATTCATTGTTGAGTGCCATCTCTAGAGATGGAAAAACTATACAAGCATTTGAATTTTTACACGTAGCTCACCAGCATATGAATATCAG GCCTGATGCTGATTCATACGCCATTCTATTAGAAGGATGGGAGAAGGAGATGAATGTGGTCTCTTCCAGAGAAACTTTCTCCGAGATGATCGAATGGGTC GGATGGGACTCGAGAAATGTCCCTGCTTACGATTCCTTTCTGTGCACTTTGATTTCATGTTCCGAAGGAACATTGATGGAAGAGGTTTTGAGACATTTGG AGAGAATGAAGGAGAAAGGATGCTGTCCAGGTATTAGGTTCCTGACATTGGCTCTTGAATCGTGTCGTAAATGTAATGATGTCGAATCTGCTGAGTTTGT TTGGGAGACGATGGTGGGTGGTGGCTTCGGAATCAAGCCTGATGCGAGGCTGTACAATGCTATGATTGTTTTGTATTGTTGTTCGAAGAACAGTAACAGG GCAATAAAGCTACTCGATGAGATGGTTTGTAAAAGGGTATTACCTGATGCGCAGAGTTATAACGGGTTGTTCCGGTTCTTGATCGAGAGTAGAAGATTGG AAGGTGCATCGGCATTGTTCAAAGAGCTGGATAGAAACGGCTGCATCCCTAACCAATTGAATTGCGGCAGAGCAGTCGAGGTGTTTCTGGAATCGGGGTA TGGTGGTATGGCAATACAGGTTTGGGAATCGATGGAACGGCATTATAAACTGGATTTGGAGGAGACTGGGAACTTGCTGATCGTGGGGCTGGTTAAGTTA CGACTGGTTCCGGAAGCAGTAGTTTACTCTGAGAGCATGATTGAGAAAGGGATTAAGCTGACTTCGGTAACGATTTCGGTGTTGGAGCACTGCCTTACTG ATGTAAGGAAGGAGTTGGTGTATGAAAGGATACTGAGGAAGTGGAAGAACTCTTTCAGCGAGATAGAGATAATGTAG
AA sequence Show only first row Show all	>Lus10028520 pacid=23166141 polypeptide=Lus10028520 locus=Lus10028520.g ID=Lus10028520.BGIv1.0 annot-version=v1.0 MDLEGGGGGGFRRSPTATAVATPYPGFWTSPAVVETIQKVSAELIGTYLLILVGCGSVAVNSIYGKATPPGVAVCWGFIVTLLSYSVGHVSGAHFNPAVT LSAAAFRGFPLRLVPWYIGVQVLGSIVASWSLELFLEITPSSYFGTVPAGSAAQSLFAETIATFILLFGISAASADNSSVGDLGPLLVGMTILMDVLLAG PISGASMNPARSIGPAVVGQGANGLWLAHLSFGEDQNSKFVTGAGQNGELPLRLPPQPTAGRPSSPARLDFAILKSAAAPLIPSFHPTVFPSYTDIPNLP PKIKLICEIIATTPPIAVERVLDGAGISVTQAEAEQVLKLSYSSPATSVKFFRWSGLRLSGGHSPYAWNLVVDLLGKNRLFDAMWGSVKSMRLERLVSSA TFASIFSSYVSAGKVKEATMTFEVMDQYGCNHDIVALNSLLSAISRDGKTIQAFEFLHVAHQHMNIRPDADSYAILLEGWEKEMNVVSSRETFSEMIEWV GWDSRNVPAYDSFLCTLISCSEGTLMEEVLRHLERMKEKGCCPGIRFLTLALESCRKCNDVESAEFVWETMVGGGFGIKPDARLYNAMIVLYCCSKNSNR AIKLLDEMVCKRVLPDAQSYNGLFRFLIESRRLEGASALFKELDRNGCIPNQLNCGRAVEVFLESGYGGMAIQVWESMERHYKLDLEETGNLLIVGLVKL RLVPEAVVYSESMIEKGIKLTSVTISVLEHCLTDVRKELVYERILRKWKNSFSEIEIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	0	1
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	2.8	0.7786
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	6.6	0.7421
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005876 [exp]	7.7	0.7281
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10027447 [exp]	7.7	0.7317
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10006425 [exp]	8.1	0.6978
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	9.8	0.7012
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	12.2	0.7090
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10015898 [exp]	12.2	0.6979
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	14.0	0.7061
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Lus10039570 [exp]	15.9	0.6999

Compare expression of checked genes

Lus10028520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.