Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 1382 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1) AT3G03370 63 / 8e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009122 [exp] 1901 / 0 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017637 [exp] 1001 / 0 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10042507 [exp] 997 / 0 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 466 / 6e-145 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 176 / 5e-50 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 100 / 4e-23 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128300 [exp] 1493 / 0 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088600 [exp] 1238 / 0 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 1177 / 0 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.001G348800 [exp] 48 / 3e-05 AT3G27925 595 / 0.0 DegP protease 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028521 pacid=23166023 polypeptide=Lus10028521 locus=Lus10028521.g ID=Lus10028521.BGIv1.0 annot-version=v1.0 ATGGCAGAGTTGGAAGCCAGCTTGAAAGACGGTCTCTGCATGGACATCGACACTCCCTTCCGAGAGAACGCTGCTACCGCCGAGGACTGGCGGAAGTCTC TGGAAAAGGTGGTTCCGGCTGTGGTGGTGCTGCGAACCACTGCCTGCCGTGCATTTGATACGGAGTCCGCCGGAGCAAGCTATGCCACTGGATTCGTTGT CGACAAGCGGCTGGGGATCATTCTCACCAATCGCCATGTTGTCAAGCCTGGACCCGTAGTTGCAGAGGCCATGTTTCTGAACCGGGAAGAAGTTCCAGTG TATCCTATATACAGAGATCCGGTCCATGATTTTGGCTTCTTTCGTTATGATCCTGGTAAAATACAATTTCTCAATTATGAGGAGATTCCTCTTGCCCCCG AGGCTGCGAGTGTTGGACTTGAAATCAGGGTTGTTGGAAATGATAGTGGCGAGAAGGTTTCAATTTTGGCTGGTACACTTGCTCGTTTGGATAGAGATGC TCCTCACTATAAAAAGGATGGATATAATGATTTCAACACTTTCTACATGCAAGCAGCATCTGGAACTAAGGGAGGTTCAAGTGGCTCTCCAGTCATTGAT TCGCAAGGGAGGGCTGTGGCTTTGAATGCTGGGAGCAAGTCTTCAAGTGCTTCAGCTTTTTTCTTACCTCTAGAACGAGTAACATTTCTACACAAGGGAT TTGATGAAACACGTCGACTTGGTCTCAAGAGTGAAACTGAGCAGATGGTCAGGGCTGCGTCTCCTCTTGGTGAAACTGGAATGCTAGTAGTTGACGCTGC GGTCCCGGGTGGGCCAGCTCATACTCATTTAGAACCAGGGGATATGCTTGTTCGTGTTAATGGAGAAGTCATGACCCAATTTCTTAAACTGGAGACCCTA CTTGACGACAGTGTTGGTGAAACGATTCAATTGCAGATAGAAAGAGGTGGCAAATCCTTCACAGTGAACTTAGTGGTTCAGGATCTTCACTCGATAACTC CCAACTACTTCTTGGAAGTAAGCGGGGCAGTTATACATCCACTGTCTTATCAACAGGCTAGGAACTTCCGTTTCCACTGTGGTTTGGTGTATGTTGCAGA CCCGGGGTATATGTTATTTCGAGCTGGAATTCCTCGTCATGCCATAATTAAGAAGTTTGCTGGGGAGGAAATATCATGCATTGATGAACTAATTCTTGTT CTAAGTAAGCTATCAAGGGGTGGCCGAGTGCCCTTAGAGTACATTAGCCACACAGATCGCCATCGAAGGAAGTCTGTTCTGGTTACAGTTGACCGCCATG AATGGTATGCCCCTCCACAGATATATACTCGTGACGATAGCTCTGGTTTGTGGATGGCAAAGCCTGCTATTCAACCAGAGTCCCTTCTTCCAGCAGCTAG TGTTAACAAGAACACAATACAACCTTTACCCAGCGAAACAGTTACATTAAGTGCAGAGGCACAAAATTTGAAAAATGTTAATCAAATTGGCAACATGGAG TCTGCAAATGGTGTCATAGCTATGGAAACATGCAATGAGCTTTCTCGAAACGAATCTGATATTGGATTAAAGAAACAACGGTTATCTGATCTTTCCGGAA ATGAAATTGCTGTTGGTGATGGTTCCTTTTCCGAACACGAGGAACTGAATATGAATGACTCAAACAGCAACGGGAATAGTGTTTTAATTGACAATCAGAA CACTGTTGGTGTGTCAGCTGTAGCTAATGCTTCATTTGCTGAGAGTGTGATAGAACCTACACTTGTGATGTTTGAGCCCACCCTTTTGCCAATTTTTCCT CTCCCCTGTACTGTTGTGGTGTATGTTGGAACAGATCCTCCATTACGCCGTGGCGATTCATTCTATCTTGTGGGTTTAAGTAGAAGTCTACAAGCAACAT CCAGGAAATCAGTTGTTACCAATCCTTGCGCTGCTTTAAATATTGGCTCAGCCGATTCTCCACGGTACAGAGCGACAAATATGGAAGTCATAGAACTAGA TACAGATTTTGGCAGTACTTTCTCGGGTGTGCTAACTAATGAGCAAGGGAAGGTGCAAGCTATTTGGGCAAGCTTTTCTACTCAGTTGAAATTCAGCGGT AGTTCATCTGAAGATCATCAATTTGTTCGAGGAATCCCTAGTTATGCAGTGAGTGAAGTCCTTGACAAGATCATATCTGGTGCAAATGGACCATCCCTTC TCATTAATGGCATTAGAAGGCCAATGCCACTTGTCAGGATTCTCGAGGTTGAGTTATATCCAACTTTGCTTTCAAAAGCACGAAGTTTCGGCCTGAGTGA CAATTGGGTGCAAGCTCTTGCGAAGAAGGATCCGATCAGAAGGCAAGTTCTCCGCGTAAAAGGTTGTTTTGCTGGATCAAAGGCTGAAAATATACTAGAA CAAGGAGATATGATTTTAGCTGTCAACAAAGCGCCCGTGACATGCTTCCGAGACATAGAGAAAGCTTGCCAAGATTTAGATAAAGTAGAAGACACTGACG GGACGCTCAAAATTACGATTTTTCGGCAAGGTCGTGAAATTGATCTTTCAGTGGGAACTGATGTTAGGGACGGTAATGGAACAACCCGGACGATAAATTG GTGCGGATGCGTTGTACAGGATCCACACCCGGCAGTTCGTGCTCTGGGATTTCTGCCTGAAGAAGGTCATGGTGTTTATGTGGCCAGGTGGTGTCATGGG AGCCCTGTACACAGATACGGGCTGTATGCCCTTCAATGGATAGTTGAAGTAAACGGAAAACCAACTCCAAATATAGACGCGTTCATTAACGTGGCCAAGG AACTGGAACATGGGGAGTTTGTGAGGGTAAGAACAGTTCACCTAAACGGGAAGCCTCGTGTGATGACGCTTAAGCAAGATCTTCATTACTGGCCAACTTG GCAGCTGAGATTCGATCCCGATACCTCCATGTGGCGTCGACAAACAATCAACTCCAAATTCTCTACTGATACACCAAAATTACAGTGA
AA sequence Show only first row Show all	>Lus10028521 pacid=23166023 polypeptide=Lus10028521 locus=Lus10028521.g ID=Lus10028521.BGIv1.0 annot-version=v1.0 MAELEASLKDGLCMDIDTPFRENAATAEDWRKSLEKVVPAVVVLRTTACRAFDTESAGASYATGFVVDKRLGIILTNRHVVKPGPVVAEAMFLNREEVPV YPIYRDPVHDFGFFRYDPGKIQFLNYEEIPLAPEAASVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVID SQGRAVALNAGSKSSSASAFFLPLERVTFLHKGFDETRRLGLKSETEQMVRAASPLGETGMLVVDAAVPGGPAHTHLEPGDMLVRVNGEVMTQFLKLETL LDDSVGETIQLQIERGGKSFTVNLVVQDLHSITPNYFLEVSGAVIHPLSYQQARNFRFHCGLVYVADPGYMLFRAGIPRHAIIKKFAGEEISCIDELILV LSKLSRGGRVPLEYISHTDRHRRKSVLVTVDRHEWYAPPQIYTRDDSSGLWMAKPAIQPESLLPAASVNKNTIQPLPSETVTLSAEAQNLKNVNQIGNME SANGVIAMETCNELSRNESDIGLKKQRLSDLSGNEIAVGDGSFSEHEELNMNDSNSNGNSVLIDNQNTVGVSAVANASFAESVIEPTLVMFEPTLLPIFP LPCTVVVYVGTDPPLRRGDSFYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTNEQGKVQAIWASFSTQLKFSG SSSEDHQFVRGIPSYAVSEVLDKIISGANGPSLLINGIRRPMPLVRILEVELYPTLLSKARSFGLSDNWVQALAKKDPIRRQVLRVKGCFAGSKAENILE QGDMILAVNKAPVTCFRDIEKACQDLDKVEDTDGTLKITIFRQGREIDLSVGTDVRDGNGTTRTINWCGCVVQDPHPAVRALGFLPEEGHGVYVARWCHG SPVHRYGLYALQWIVEVNGKPTPNIDAFINVAKELEHGEFVRVRTVHLNGKPRVMTLKQDLHYWPTWQLRFDPDTSMWRRQTINSKFSTDTPKLQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	0	1
AT1G06900			Insulinase (Peptidase family M...		Lus10042213 [exp]	1.4	0.8698
AT3G04160			unknown protein		Lus10021983 [exp]	5.7	0.8126
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	9.4	0.8510
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	10.0	0.8131
AT3G56870			unknown protein		Lus10018851 [exp]	11.4	0.8364
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	12.1	0.7654
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Lus10023224 [exp]	15.0	0.8058
AT1G60400			F-box/RNI-like superfamily pro...		Lus10009224 [exp]	15.5	0.8047
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	19.0	0.7849
AT5G26760			unknown protein		Lus10022386 [exp]	19.0	0.7919

Compare expression of checked genes

Lus10028521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.