Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10028524 pacid=23165982 polypeptide=Lus10028524 locus=Lus10028524.g ID=Lus10028524.BGIv1.0 annot-version=v1.0 ATGGGAGAAGCATTCTTGGATTACGCAAAGGAGCTTTACCGAAACGGAAAGGTGAACGAAGCCTACAACATGGCACTCCTAGTCTCCCGCAACGACGCCT TCTGTCCAAACGTCCACCAGTTGGTCGCCATCTACGGCGTCCTCATCCACCGCCGCAGCGCCGTCAACAGAAGTCGCATCGACTGCTACAGAGTCCTCGG AGTCCCCTCCTCCGCCTCCGACGAACAAATCGCCCACCGATTCGCTACTCTCAAGAAAATCATCGCCCCCGCCCGCAATACCTCCCCGTCCGCCTCCCGG AGCAGTACTGCCGCCGCTGCCGAGGCTGCTAATTCCCTCCTCAATTTCGCCTTCGAGACTTTGTCGGATGAGAGATCCAGACGGGAGTTTGATTCTCGCC GGAAGTTGTCGCAATTGAAGAAGCCTACTGATCAGAATGCCGGCAAGGAGAAGAAGGAGTCGCTGATTCTCCCTCCCCCGCCGCCACAATGGAAGGAGGC TCCGGTGAGAAGGATCCGAGTGGTGTACGGCACGAAGAAGAGCTATCGATGTGATCCTATCGGTTCAAGTTTAAGCGGCCACCATCGAAGGCGGATGCAG AGTGGGATGTGA
AA sequence Show only first row Show all	>Lus10028524 pacid=23165982 polypeptide=Lus10028524 locus=Lus10028524.g ID=Lus10028524.BGIv1.0 annot-version=v1.0 MGEAFLDYAKELYRNGKVNEAYNMALLVSRNDAFCPNVHQLVAIYGVLIHRRSAVNRSRIDCYRVLGVPSSASDEQIAHRFATLKKIIAPARNTSPSASR SSTAAAAEAANSLLNFAFETLSDERSRREFDSRRKLSQLKKPTDQNAGKEKKESLILPPPPPQWKEAPVRRIRVVYGTKKSYRCDPIGSSLSGHHRRRMQ SGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19570			Chaperone DnaJ-domain superfam...		Lus10028524 [exp]	0	1
AT4G14746			unknown protein		Lus10025761 [exp]	7.3	0.6172
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	10.8	0.6232
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028002 [exp]	11.0	0.6081
AT1G52190			Major facilitator superfamily ...		Lus10009505 [exp]	17.5	0.5516
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	23.0	0.6029
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030458 [exp]	23.1	0.5363
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027896 [exp]	25.0	0.5430
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028883 [exp]	26.3	0.5563
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	43.0	0.5349
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10004439 [exp]	51.5	0.5025

Compare expression of checked genes

Lus10028524 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.