Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01390 604 / 0 EMB3111 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01360 145 / 1e-40 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G65560 138 / 6e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 124 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 122 / 8e-29 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 119 / 6e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G31850 118 / 1e-27 PGR3 proton gradient regulation 3 (.1) AT1G03560 116 / 3e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G18900 116 / 7e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT4G28010 114 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042529 [exp] 133 / 3e-32 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 133 / 3e-32 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 132 / 4e-32 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 132 / 5e-32 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 127 / 1e-30 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10006373 [exp] 125 / 7e-30 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 124 / 2e-29 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 121 / 2e-28 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 121 / 2e-28 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G127500 [exp] 676 / 0 AT2G01390 635 / 0.0 EMBRYO DEFECTIVE 3111, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 135 / 2e-33 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G124900 [exp] 135 / 3e-33 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 129 / 2e-31 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 127 / 5e-31 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 127 / 6e-31 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G180000 [exp] 125 / 5e-30 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G032600 [exp] 125 / 5e-30 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G250700 [exp] 124 / 1e-29 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 123 / 2e-29 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028525 pacid=23166088 polypeptide=Lus10028525 locus=Lus10028525.g ID=Lus10028525.BGIv1.0 annot-version=v1.0 ATGTTTCGTCCAAATGGATTCAAAATATTCCGACCGAGTCGTCTGAATTTCTTCAGAGCAGCCCATTCAGGGCGGCGCCTACCAGGTCGACCGATCAAAC GTTTCACCGGAAGTTCAAGAAAGCCATCCAATTCGGCGGCGAGGAAGGAGGAGCTACAAGCCCCAAGCTCCTACACGCGGAATACCGTGTCCAGCATATA CGGAATCCTAAAGTATTCCGATTGGGAGACCGCGCAGCAACTGCTGCGAAACCTTCCTATCAAAAAATGGGACTCGTACACCGTGAACCAGGTGCTCAAA ACCCACCCTCCGATGGAGAAAGCCTGGCTCTTTTTCAACTGGGCAGCTTCGAAGCTAGTCGGGTTCAAGCACGACAGGTTTACTTACACGACGATGCTGG ACATTTTTGGGGAAGCTGGGAGATTGGAATCCATGCTCCAGGTGTTCGACGAAATGCGTGAACGAGGGATTGAGACTGATGCGGCGACGTACACTTCGAT TATGCATTGGGTTTCGAAATCAGGTGAGGTGGACGAGGCTGTGAAGATTTGGACGGAAATGAAGGAACGTGGGTGTCGACCTACTGTTGTTTCCTATACG GCATATATGAAAATTCTGTTTGATAATGAGAGAGTGAAAGAGGCGACTAATGTGTATTTGGAAATGCTTGAAGTTGGGATTACTCCAAATTGCCACACGT ATACGGTGCTGATGGAACATCTAGTCGTTGCTGGCAAGTTCCAAGAAGCTGTTAACATATTCAACACAATGCAAGATGCTGGAGTGGATCCGGACAAAGC TGCATGCAATATCTTGATCCAGAAATGTTGTGCTGTGGGCGAGACGAAGACAATGGTTCCAATTCTTCATTACATGAAAGAGCATCGGCTTGTTCTCCGT TACTCCGTATTTCTGGAAGCGTTGAAAGCTCTACAAGTTGCTGGTGAGAGTGACACCCTCCTTAGGCAAGTCAATCCTCATTGTGTAGCTACCACCGAAT GCATCAGTAATGAGGAAGAAGGATCTGTGAAGTCTACAACTTCTCCACATGATCATTTAGATAGCGGACTCATGCAGATTCTCTTGGCGAAGAGAAGTTT CGTTGCAGTTGATCAGCTACTTACCGGGATGATAGAAAAGAATCTTCTGTTGGATTCCTGGACCGTCTCGCATATCATTGAGCGAAATTGCGATCTTTGC AGACAAGATGGAGCTCTATTAGCATTTGAGTATAGCAGGAAAATGGGAGTCGAGCTTGGAAGAACAGCATATCTTTGCTTGACAGGAAGTTTGATGAGAT CCAACATGTTTGATAAGGTGTTTGAGATCGTCAGTGAAATGATTCGGTCAGGACATTCGCTTGGAATCTATCTGAGTTCTGTATTGATTTATAAGCTTGG GAAAGCTAGAAGACCGACTTGTGCTGCAAAGCTGTTTGCTTCGTTGCCTGACGACGAGATGTGCACTGCTACTTATACTGCTCTTGTCAGCACATACTTC TCTGCTGGTACTGCAGAGAAGGCACTCAAAACTTTCGAGACGATGAAAAAGAAAGCTGTTTTGCCTTCGCTAGGTACGTACGATATTCTGTTGGCGGGTC TTGAAAAGTTGGGTAGAGGAAGTGAAGTAGAAGTTTACAGGAAAGAAAGGAAGAGCCTACTGGTTCAGGGTCATCGTCAGGACAATGTTGTAGATGAAAA GATCTGTGACATTTTGTTCGCTGAAAATTCAGTAACTTGA
AA sequence Show only first row Show all	>Lus10028525 pacid=23166088 polypeptide=Lus10028525 locus=Lus10028525.g ID=Lus10028525.BGIv1.0 annot-version=v1.0 MFRPNGFKIFRPSRLNFFRAAHSGRRLPGRPIKRFTGSSRKPSNSAARKEELQAPSSYTRNTVSSIYGILKYSDWETAQQLLRNLPIKKWDSYTVNQVLK THPPMEKAWLFFNWAASKLVGFKHDRFTYTTMLDIFGEAGRLESMLQVFDEMRERGIETDAATYTSIMHWVSKSGEVDEAVKIWTEMKERGCRPTVVSYT AYMKILFDNERVKEATNVYLEMLEVGITPNCHTYTVLMEHLVVAGKFQEAVNIFNTMQDAGVDPDKAACNILIQKCCAVGETKTMVPILHYMKEHRLVLR YSVFLEALKALQVAGESDTLLRQVNPHCVATTECISNEEEGSVKSTTSPHDHLDSGLMQILLAKRSFVAVDQLLTGMIEKNLLLDSWTVSHIIERNCDLC RQDGALLAFEYSRKMGVELGRTAYLCLTGSLMRSNMFDKVFEIVSEMIRSGHSLGIYLSSVLIYKLGKARRPTCAAKLFASLPDDEMCTATYTALVSTYF SAGTAEKALKTFETMKKKAVLPSLGTYDILLAGLEKLGRGSEVEVYRKERKSLLVQGHRQDNVVDEKICDILFAENSVT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Lus10028525 [exp]	0	1
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019081 [exp]	4.7	0.7957
AT5G14050			Transducin/WD40 repeat-like su...		Lus10036236 [exp]	13.4	0.8362
AT4G12130			Glycine cleavage T-protein fam...		Lus10024566 [exp]	19.5	0.7296
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	20.2	0.7957
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10038832 [exp]	43.0	0.7580
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	45.4	0.7877
AT1G31600		AtTRM9	Arabidopsis thaliana tRNA meth...		Lus10037263 [exp]	52.5	0.7932
AT4G12130			Glycine cleavage T-protein fam...		Lus10032204 [exp]	57.1	0.7555
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	57.1	0.7174
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	58.0	0.7471

Compare expression of checked genes

Lus10028525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.