Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18975 327 / 8e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) AT4G21190 161 / 1e-47 EMB1417 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G04590 124 / 8e-33 EMB2748 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009120 [exp] 275 / 1e-91 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10039292 [exp] 131 / 2e-35 AT4G21190 339 / 7e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027535 [exp] 126 / 1e-34 AT4G21190 302 / 5e-103 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019008 [exp] 127 / 2e-34 AT1G04590 281 / 5e-93 unknown protein Lus10015943 [exp] 125 / 2e-34 AT1G04590 284 / 3e-95 unknown protein Lus10018318 [exp] 41 / 0.001 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076800 [exp] 353 / 4e-123 AT4G18975 320 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Potri.017G148700 [exp] 164 / 2e-48 AT4G21190 339 / 3e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G091500 [exp] 128 / 2e-35 AT1G04590 272 / 3e-90 unknown protein Potri.016G103000 [exp] 126 / 2e-34 AT1G04590 300 / 9e-101 unknown protein Potri.016G102800 [exp] 51 / 3e-08 AT1G04590 158 / 2e-48 unknown protein Potri.013G047000 [exp] 44 / 0.0001 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G040200 [exp] 44 / 0.0001 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G029900 [exp] 42 / 0.0003 AT5G19020 789 / 0.0 mitochondrial editing factor 18 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028526 pacid=23166031 polypeptide=Lus10028526 locus=Lus10028526.g ID=Lus10028526.BGIv1.0 annot-version=v1.0 ATGAATCAAGCAGCTATTTCACCAGTATATGGATTTTCAAGTTTTGGGTTCTCCATCATGCGAAGGTCATCAAACTGGGTTTGTTCTTCCCACATCTCTA CAACCGCAAGGTGTAGAACTCAAGTATCTTGCAGTAACTTGCGTACATCAGATGCTCGTGATGCCAGATTTTCCAAGGGTCGAGGTGTTGCAGATAAAGC AGATAAGAGTAGGATAACTACCAAGAAAGTGAAGGATAATGAGCGTCATTTGTGGAAGAAAAGGGATTCTGCTGGATCTGGAAAAAAGGCTCTCAATCTT GTTAGAATTGTGTCTGAAGTTCCGAATGAGAAAGAAGCTGTTTATGGAGCATTAGATAAGTGGACAGCATGGGAGACAGAATTTCCTGTCATTGCGGCTG CTAAAGCCTTACAAATCCTGAGGAGGAAGGCACAGTGGCACCGAATAATTCAAGTGGCAAAATGGATGTTGAGCAAAGGTCAAGGGGACACAATGGCAAC ATATGACACTCTTTTGCTAGCATTTGATATGGAGGGCAGAGTAGACGAAGCGAAGGCACTATGGACCATGGTTTTGCATATACACCACCGCTCTATATCG AAACGTTTGTTTGCAAGGATGATTTTTTTATATGATCACCATGATATCCCGAATGGGGTCGTAGAGGTGTTTGCGGACATGGAGGAGTTGGGAGTACGAC CTGATGAAGATACGGTCAGGAAAGTGGCTCGTGCGTTCAAGATACTAGGCCAGAAAGAGAAAGCAATGTTGGTTCTCCAAAGATACCTATCGGATTGGAA ATATGTCCACTTCAACAGCGAAAGGGTTAGAGTGAGAAGAAACAAATGGGTAGATGACTGA
AA sequence Show only first row Show all	>Lus10028526 pacid=23166031 polypeptide=Lus10028526 locus=Lus10028526.g ID=Lus10028526.BGIv1.0 annot-version=v1.0 MNQAAISPVYGFSSFGFSIMRRSSNWVCSSHISTTARCRTQVSCSNLRTSDARDARFSKGRGVADKADKSRITTKKVKDNERHLWKKRDSAGSGKKALNL VRIVSEVPNEKEAVYGALDKWTAWETEFPVIAAAKALQILRRKAQWHRIIQVAKWMLSKGQGDTMATYDTLLLAFDMEGRVDEAKALWTMVLHIHHRSIS KRLFARMIFLYDHHDIPNGVVEVFADMEELGVRPDEDTVRKVARAFKILGQKEKAMLVLQRYLSDWKYVHFNSERVRVRRNKWVDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	0	1
AT2G39170			unknown protein		Lus10040608 [exp]	2.2	0.8782
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	4.5	0.8715
AT1G80380			P-loop containing nucleoside t...		Lus10018910 [exp]	4.9	0.8857
AT5G15802			unknown protein		Lus10008785 [exp]	6.9	0.8782
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	7.5	0.8730
AT1G12250			Pentapeptide repeat-containing...		Lus10024602 [exp]	11.7	0.8838
AT1G61770			Chaperone DnaJ-domain superfam...		Lus10020062 [exp]	12.6	0.8192
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	14.3	0.8337
AT5G61820			unknown protein		Lus10015933 [exp]	16.3	0.8330
AT1G72200			RING/U-box superfamily protein...		Lus10028454 [exp]	16.4	0.7638

Compare expression of checked genes

Lus10028526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.