Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37850 446 / 1e-158 SOS4, ATSOS4 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) AT1G22940 53 / 1e-07 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009119 [exp] 522 / 0 AT5G37850 531 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10000451 [exp] 489 / 4e-176 AT5G37850 473 / 3e-170 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10010977 [exp] 489 / 5e-176 AT5G37850 471 / 2e-169 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10001365 [exp] 50 / 1e-06 AT1G22940 720 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10015466 [exp] 49 / 4e-06 AT1G22940 734 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129000 [exp] 464 / 1e-165 AT5G37850 534 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Potri.003G015700 [exp] 55 / 4e-08 AT1G22940 710 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF08543 [flax] [poplar] Phos_pyr_kin Phosphomethylpyrimidine kinase
Representative CDS sequence Show only first row Show all	>Lus10028527 pacid=23166029 polypeptide=Lus10028527 locus=Lus10028527.g ID=Lus10028527.BGIv1.0 annot-version=v1.0 ATGAGCTCCAGCAATTCGGCAACGGCGCCTCCGATCTTGTCTCTGGCTCTTCCTTCTGAAACTGGTCGAGTTCTTAGCATTCAGTCTCACACGGTGCAGC GAGAGCAATGGTGCAGGGATACGTTGGCAACAAATCAGCAGTTTTTCCTCTCCAGCTATTGGGCTATGACGTGGATCCCATCAATTCAGTACAGTTTTCA AACCACACAGGCAAGCTGTTCATCTTTTATGCCTGGTTATCCAAGCTTCAAAGGACAAGTTTTGAATGGGCAACAGCTATGGGAACTAATCGAAGGTCTT GAAGCAAATAACTTGTTATACTATACTCACTTGCTAACAGGTTATATAGGTTCAGAGTCATTTCTCAACACTATATTACAGGTGGTCAATAAGCTTCGCA CTATAAATCCCAAGCTCACTTATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTGTATGTCCCCCCAGACCTGGTAGCGGTGTACCGTGAGAAGGT TGTTCCAGTGGCATCAATGTTGACTCCTAATCAGTTTGAAGCTGAGCAGTTAACTGGCTCAAGGATTGTGTCTGAAAGTGATGCCCGCGAGGCTTGCAAT AAGCTTCATGCTGCTGGACCTTCGAAGGTTGTGATTACTAGCATTAATATAGGTGGTGATGGTCTTCTTCTTATTGGCAGCCATCAAAAGGAGAAGGGTC AGTCAGCTCAACAATTCAAGATTGCGATTCCCAAAATTCCTGCATATTTCACGGGAACAGGGGATTTAATGACAGCACTTCTACTTGGGTGGAGCAATAA ATATCCCGACAATCTTGACAAGGCTGCGGAGCTTGCAGTATCAAGCTTGCAGGCTCTACTTCAAAGAACGTTGAACGATTATCGAAAGGCTGGATACGAT CCAGCAGCAAGCAGCTTGGAAATTCGATTGATTCAGAGCCAAGACGACATTCGCAACCCAACCGTTGAATACAAATCCCAAAAGTACTCTTCGTAA
AA sequence Show only first row Show all	>Lus10028527 pacid=23166029 polypeptide=Lus10028527 locus=Lus10028527.g ID=Lus10028527.BGIv1.0 annot-version=v1.0 MSSSNSATAPPILSLALPSETGRVLSIQSHTVQREQWCRDTLATNQQFFLSSYWAMTWIPSIQYSFQTTQASCSSFMPGYPSFKGQVLNGQQLWELIEGL EANNLLYYTHLLTGYIGSESFLNTILQVVNKLRTINPKLTYVCDPVMGDEGKLYVPPDLVAVYREKVVPVASMLTPNQFEAEQLTGSRIVSESDAREACN KLHAAGPSKVVITSINIGGDGLLLIGSHQKEKGQSAQQFKIAIPKIPAYFTGTGDLMTALLLGWSNKYPDNLDKAAELAVSSLQALLQRTLNDYRKAGYD PAASSLEIRLIQSQDDIRNPTVEYKSQKYSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10028527 [exp]	0	1
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	6.8	0.9177
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	8.0	0.9272
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	16.0	0.8400
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	16.4	0.9166
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10041581 [exp]	18.0	0.8739
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	20.4	0.9156
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	21.0	0.9065
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	24.1	0.9087
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	24.6	0.9124
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023433 [exp]	25.1	0.8677

Compare expression of checked genes

Lus10028527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.