Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66510 459 / 9e-161 AAR2 protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009118 [exp] 577 / 0 AT1G66510 505 / 7e-180 AAR2 protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G123900 [exp] 523 / 0 AT1G66510 577 / 0.0 AAR2 protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05282 [flax] [poplar] AAR2 AAR2 protein
Representative CDS sequence Show only first row Show all	>Lus10028528 pacid=23166037 polypeptide=Lus10028528 locus=Lus10028528.g ID=Lus10028528.BGIv1.0 annot-version=v1.0 ATGGATCCCAACACAGCCTTGGAGCTTGTGAAACAGGGAGCTACACTACTCCTCCTCGATGTTCCTCAGTACACTCTTATCGGCGTTGATACTCAGGTTT TCACTGCCGGTCCGGCTTTTAAGGGTATTAAGATGATTCCGCCTGGTGTCCATTTTCTATACTTCAGCGCCTCCACCAGATTTGAAAACAGTCACGTCTG TCTTCATTCCAGGGAAGGCAAGGAGTTTTCACCAGTGATTGGTTCCTTTATTGATGTTGGTCCATCGGAGACAGAGAGATTTGCTCAAGCAGTTATACGT CTGGAATTTGATGGAAACCTTGGTCCTTACAACGCAAGCCAATACAGAGAGTGGAAAAGACTGTCCAATTATCTCACGAGGAGCATTATTGAGCGAATAG GTATTGCAGCTACGAGCAGTTCTTATAAACAAACTTGCGTTGCTGTCTTAAGGTCTCCTCTTTGTGGTTTTCCGGAACCTATTGGAGGAGAAATCACGAT CACAAGCGAATCAAAAATATTTGAAAATGTTCCTAAAACATCCATGGAGGAAGCTTTAGATGAGCAATTGGGGAACAAAAAGTTCTCCACGTCTACAACC ACTGACAAGTCAACAATGAGAGGATGCTATTATACCCGGATTCCTCGCACTATTAAACACAAAGGAATCGCTGCAAAGGAACTTACTTCTTTGAATCTTG ACAAGACAGAACTGCTAGAGAGCATTTTGATGAAACATTATGGAGGTAGCGAAGATGTCCTTCTCGGAGAGCTTCAGTTTTCATATATTGCGTTTCTGAT GGGGCAGTCACTTGAAGGTTTTTTCCAGTGGAAATCTCTGGTCAGTCTTTTGCTTGGCTGTGTAGAAGCTCCTTTCCGCACAAGGAGTCGTCTATATGCC AAGTTCATCAAGGTGATATACTACCAACTGAAATTTGGACTGCAGAAGGATAGGGAGGATACCAACTCTGCAGGTGTAGGAGTATCATCATTGTTGGATG AGTCTTGGTTCACTGCTGATAGCTTTCTGCATCGGCTTTTGAAGGAATTCTTTTCGCTCTTACAAGAGGCATCCGTGATAGATGGAGATCTTCTCTCATG GAGCAGGAAACTGAAAGAAATGGTGGAGAATGAGTTGGGATGGGAGTTGCAGCAACAGAGTAATTCAGTCGATGGGATATACTTTGAAGAAGACGATGAG GTCAGTAAATTAAATTTCTCCAATCATCTCCCTTTCAATTCTCATTATTTTCCCTGGTTACAGTTCTCTTACACAGTTGAGTTCCATGTAAATGCAGTAT GCGCCGGCAGTAGTTAG
AA sequence Show only first row Show all	>Lus10028528 pacid=23166037 polypeptide=Lus10028528 locus=Lus10028528.g ID=Lus10028528.BGIv1.0 annot-version=v1.0 MDPNTALELVKQGATLLLLDVPQYTLIGVDTQVFTAGPAFKGIKMIPPGVHFLYFSASTRFENSHVCLHSREGKEFSPVIGSFIDVGPSETERFAQAVIR LEFDGNLGPYNASQYREWKRLSNYLTRSIIERIGIAATSSSYKQTCVAVLRSPLCGFPEPIGGEITITSESKIFENVPKTSMEEALDEQLGNKKFSTSTT TDKSTMRGCYYTRIPRTIKHKGIAAKELTSLNLDKTELLESILMKHYGGSEDVLLGELQFSYIAFLMGQSLEGFFQWKSLVSLLLGCVEAPFRTRSRLYA KFIKVIYYQLKFGLQKDREDTNSAGVGVSSLLDESWFTADSFLHRLLKEFFSLLQEASVIDGDLLSWSRKLKEMVENELGWELQQQSNSVDGIYFEEDDE VSKLNFSNHLPFNSHYFPWLQFSYTVEFHVNAVCAGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	0	1
AT4G09140		ATMLH1	ARABIDOPSIS THALIANA MUTL-HOMO...		Lus10034734 [exp]	2.4	0.8266
AT3G19460			Reticulon family protein (.1.2...		Lus10019812 [exp]	4.5	0.8561
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10000852 [exp]	9.1	0.7174
AT5G56790			Protein kinase superfamily pro...		Lus10024111 [exp]	9.7	0.7652
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	11.6	0.7526
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	12.4	0.8081
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	13.0	0.7776
AT1G71870			MATE efflux family protein (.1...		Lus10027277 [exp]	15.0	0.7317
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	15.9	0.7764
AT4G30820			cyclin-dependent kinase-activa...		Lus10024924 [exp]	15.9	0.7878

Compare expression of checked genes

Lus10028528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.