Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 76 / 2e-15 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G37860 74 / 3e-15 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 74 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G27690 72 / 3e-14 Heavy metal transport/detoxification superfamily protein (.1) AT3G05220 72 / 6e-14 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G56210 65 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 60 / 6e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G05365 52 / 5e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 52 / 6e-08 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009116 [exp] 442 / 2e-153 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10032445 [exp] 83 / 6e-18 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10041228 [exp] 77 / 1e-15 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10031495 [exp] 73 / 3e-14 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 71 / 1e-13 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10029942 [exp] 66 / 1e-11 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 64 / 3e-11 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031514 [exp] 62 / 1e-10 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10013911 [exp] 60 / 1e-10 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091700 [exp] 123 / 3e-33 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 89 / 5e-20 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 82 / 2e-17 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 82 / 4e-17 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.010G024700 [exp] 76 / 1e-15 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 75 / 3e-15 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 75 / 3e-15 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.013G017700 [exp] 73 / 2e-14 AT5G27690 115 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G026100 [exp] 70 / 2e-13 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 60 / 6e-11 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10028529 pacid=23166163 polypeptide=Lus10028529 locus=Lus10028529.g ID=Lus10028529.BGIv1.0 annot-version=v1.0 ATGACACACAGAGACACACACATTATGCTATGTTCCTCTCTCTGTGTCAGAAATGTCCCAATCTTACCTAGTCATCTATCAAACTCCATTACCAATGCCA TGCCATCCACACTTCTCTTGCCTACTCCCTCTCTCTCCAATCTGCAATCTTCTCTTATAAGCTTTCTTTTCCCTTCCATTAAGAGGGACAAGCATGTCCT GAAAGTGAACGTGGACTGTGAAGGGTGTCGGAAGAAAGTCTGGAAATTGCTCAAGAAGATTGATGGTGTATACTCCATAGACATTGATGAAGAAACCCAG GAGGTGACTGTGTCAGGAGCTGTGCATTCTGCTACTTTGATCAAGATGTTGCACAAAGTTGGCAAATATGCAGAGCTTTGCTTTCCAAGAGTGCAGCTTC AAGCAGCTCTTGTCCCTGGTAAACAGAACATGCGTCCTATTTCCACTGAGGATGAAGTTGAGGATCTCAATGGCAGCTTCTTCAGGAACCAGAACATAGG GATGGGTTCTTCTGGTACGAATCCTGCCGATTTAATGGCTGTGGCAAGGATAGAAGATGTTTACAGGGACGAGGATAGGTTTGCCGGATGGAACAGCAAT CTGGGATCAAATAGGCCTCAAGGAGGGTATCACGGGAGTTATGATCGTTCTTTTGGGTTCTCTGGGATGCCAACTTATGAGGTCAATCATCAGCCGTTGA TGGCGAACCAGCAAGGTTCGTACCGCTACTTCCCATCCACAGACATGAATAAGGGCTATATTGGCAACAGGATTGGAAATAATGATATGAGGTTACCTGA CATGATGAATTATGGTCCTTCCTTGTTTCGTCCCCAAGCTGCTCCTATGGCCAGTATTGACTATAACCTTGCAGCTGGACAGCAACCTTACCGTTAA
AA sequence Show only first row Show all	>Lus10028529 pacid=23166163 polypeptide=Lus10028529 locus=Lus10028529.g ID=Lus10028529.BGIv1.0 annot-version=v1.0 MTHRDTHIMLCSSLCVRNVPILPSHLSNSITNAMPSTLLLPTPSLSNLQSSLISFLFPSIKRDKHVLKVNVDCEGCRKKVWKLLKKIDGVYSIDIDEETQ EVTVSGAVHSATLIKMLHKVGKYAELCFPRVQLQAALVPGKQNMRPISTEDEVEDLNGSFFRNQNIGMGSSGTNPADLMAVARIEDVYRDEDRFAGWNSN LGSNRPQGGYHGSYDRSFGFSGMPTYEVNHQPLMANQQGSYRYFPSTDMNKGYIGNRIGNNDMRLPDMMNYGPSLFRPQAAPMASIDYNLAAGQQPYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23000			Heavy metal transport/detoxifi...		Lus10028529 [exp]	0	1
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	5.6	0.8681
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	6.3	0.8524
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10017233 [exp]	7.7	0.8468
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	12.8	0.8486
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10017296 [exp]	13.7	0.8121
AT2G40435			unknown protein		Lus10017415 [exp]	13.7	0.8356
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019871 [exp]	13.9	0.8393
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	13.9	0.7337
					Lus10035688 [exp]	13.9	0.8438
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039593 [exp]	14.2	0.7310

Compare expression of checked genes

Lus10028529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.