Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17330 855 / 0 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT2G02010 850 / 0 GAD4 glutamate decarboxylase 4 (.1) AT2G02000 829 / 0 GAD3 glutamate decarboxylase 3 (.1) AT1G65960 820 / 0 GAD2 glutamate decarboxylase 2 (.1.2) AT3G17760 782 / 0 GAD5 glutamate decarboxylase 5 (.1.2) AT3G17720 251 / 3e-81 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G27980 91 / 2e-19 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019136 [exp] 847 / 0 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10035096 [exp] 818 / 0 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10034425 [exp] 588 / 0 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10009116 [exp] 350 / 2e-114 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1) Lus10034426 [exp] 209 / 8e-66 AT2G02010 227 / 4e-73 glutamate decarboxylase 4 (.1) Lus10031934 [exp] 205 / 2e-64 AT2G02010 229 / 2e-74 glutamate decarboxylase 4 (.1) Lus10003129 [exp] 77 / 7e-15 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10011345 [exp] 74 / 1e-13 AT1G27980 794 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10028592 [exp] 47 / 3e-05 AT1G43710 789 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G075300 [exp] 863 / 0 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075200 [exp] 860 / 0 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.017G144421 [exp] 854 / 0 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.008G141100 [exp] 843 / 0 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.010G100500 [exp] 838 / 0 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.012G039000 [exp] 797 / 0 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.003G168800 [exp] 97 / 3e-21 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10028530 pacid=23166006 polypeptide=Lus10028530 locus=Lus10028530.g ID=Lus10028530.BGIv1.0 annot-version=v1.0 ATGTCTCTGTCGACAGCTAAGTCGGAGTCAGACGAGTCGGTCCACTCCACGTTCGCTTCTCGTTACGTCCGGACCACGCTCCCCAGGTTTAAGATGCCGG AGAACTCGATACCGAAGGAAGCGGCGTACCAGATAATAAACGACGAGCTGATGCTGGACGGGAATCCGAGGCTGAACCTGGCGTCGTTCGTGACGACGTG GATGGAGCCGGAGTGCGATAAGCTGATAATGGACTCCATCAACAAGAACTACGTCGACATGGATGAGTACCCCAACCGATGCGTAAACATGATAGCCAGG CTGTTCAACGCGCCACTGAGAGACAGTGAAGCCGCCATGGGAGTAGGCACCGTCGGATCGTCGGAAGCCATCATGCTCGCTGGACTAGCCTTCAAGCGAA AATGGCAGAACAAGAGGAAAGCCGCGGGACTCCCCACAGACAAACCAAACATCGTGACGGGAGCCAACGTACAGGTGTGCTGGGAGAAGTTCGCCAGGTA CTTCGAGGTCGAGCTCAAGGAAGTGAAGCTTCGCGAGGGCTACTACGTGATGGACCCCGCAAAGGCCGTTGAGATGGTGGACGAGAACACCATCTGCGTG GCGGCCATCCTGGGGTCCACCTTGAACGGGGAGTTCGAGGACGTGAAGACGTTAAATGATTTGTTGGCCGAGAAGAATAAGGAGACCGGGTGGGACACGC CGATTCACGTGGACGCGGCGAGCGGCGGGTTTATTGCGCCGTTTTTGTACCCGGAGCTGGAGTGGGACTTCAGGTTGCCGTTGGTCAAGAGTATTAATGT GAGCGGGCATAAGTATGGGTTGGTGTATGCTGGGATTGGGTGGGTGATTTGGAGGAATGTGGAGGATTTGCCTGATGAGCTTATCTTTCATATTAACTAC CTTGGTGCTGATCAGCCTACTTTCACTCTCAACTTTTCCAAAGGTTCTAGTCAAGTAATTGCACAATATTATCAGCTTATTCGTTTGGGCCAAGAGGGAT ATAGGCACGTGATGGAGAACTGCATGGAGAACATGAAGGTGCTGGCGGCGGCGCTCGAGAAAACCGGAAGGTTCAACATAGTCTCCAAGGACGTCGGGGT CCCACTGGTGGCATTCTCCTTAAAGGACAACTCATCCCACGACGAGTTCGAGATCGCCGACCTCCTCCGCCGCTACGGCTGGATCGTCCCGGCCTACACC ATGCCCGCCGACGCCCAACACGTCACCGTCCTCCGCGTCGTCATCCGCGAAGACTTCTCCCGCACTTTGGCCGAGCGCCTGGTCAACGACATCCAGAAGG TGCTGCACGACCTGGAGGTGCTGCCGTCCAAGTTGAAGGCCAAGATGTCCATGGCCGGAGAAGACGCGGACCAGACTCTGTTCCAGAACAAGAAGACGGC GGTGGAGACCCAGCGGGAGGTCACCGAGCATTGGAAGAAGTTCGTCATGGAGCGCAAGAGTAAGAAGAACGGCGTTTGCTGA
AA sequence Show only first row Show all	>Lus10028530 pacid=23166006 polypeptide=Lus10028530 locus=Lus10028530.g ID=Lus10028530.BGIv1.0 annot-version=v1.0 MSLSTAKSESDESVHSTFASRYVRTTLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPNRCVNMIAR LFNAPLRDSEAAMGVGTVGSSEAIMLAGLAFKRKWQNKRKAAGLPTDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPAKAVEMVDENTICV AAILGSTLNGEFEDVKTLNDLLAEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNVEDLPDELIFHINY LGADQPTFTLNFSKGSSQVIAQYYQLIRLGQEGYRHVMENCMENMKVLAAALEKTGRFNIVSKDVGVPLVAFSLKDNSSHDEFEIADLLRRYGWIVPAYT MPADAQHVTVLRVVIREDFSRTLAERLVNDIQKVLHDLEVLPSKLKAKMSMAGEDADQTLFQNKKTAVETQREVTEHWKKFVMERKSKKNGVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	3.0	0.9124
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	3.2	0.9078
AT1G08800			Protein of unknown function, D...		Lus10018782 [exp]	4.7	0.8697
AT3G23110		EMB2800, AtRLP3...	EMBRYO DEFECTIVE 2800, recepto...		Lus10024721 [exp]	5.7	0.8874
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	5.9	0.8799
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	6.0	0.8957
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	6.3	0.8761
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10041174 [exp]	8.8	0.8180
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	8.8	0.8624
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	9.5	0.8788

Compare expression of checked genes

Lus10028530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.