Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47510 858 / 0 FUM1 fumarase 1 (.1.2) AT5G50950 853 / 0 FUM2 FUMARASE 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009114 [exp] 980 / 0 AT2G47510 882 / 0.0 fumarase 1 (.1.2) Lus10032296 [exp] 840 / 0 AT5G50950 849 / 0.0 FUMARASE 2 (.1.2.3) Lus10002606 [exp] 46 / 6e-05 AT5G10920 769 / 0.0 L-Aspartase-like family protein (.1) Lus10032846 [exp] 44 / 0.0004 AT5G10920 753 / 0.0 L-Aspartase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201300 [exp] 897 / 0 AT2G47510 877 / 0.0 fumarase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10415 [flax] [poplar] FumaraseC_C Fumarase C C-terminus PF00206 [flax] [poplar] Lyase_1 Lyase
Representative CDS sequence Show only first row Show all	>Lus10028532 pacid=23166112 polypeptide=Lus10028532 locus=Lus10028532.g ID=Lus10028532.BGIv1.0 annot-version=v1.0 ATGATAATTCTGGTGCGTTTAACTGTTTGCGATGAAGGGCGCCGATCACTTGGGTTGATCACTTCTCACATTGGTGACTCTTCGTCATCAGTGCTCCGTT GTGCGACTCCGTGGAGATCATTTTCAACTTCCTTCAGGGAAGAGCGGGACACTTTTGGACCAATTCAAGTTCCATCGGATAAGTTATGGGGTGCACAAAC TCAAAGATCATTGCAGAATTTTGATATTGGTGGCGAGCGTGAGCGAATGCCGGAGCCAATCATTCGTGCCTTTGGTATCCTCAAGAAATGTGCCGCTAAG GTGAACATGGACTATGGTCTTGATCCAACAATTGGTAAGGCCATCATGCAGGCTGCTCAAGAGGTTGCCGAGGGGAAGCTAAATGATCATTTTCCACTTT TTGTGTGGCAGACTGGTAGTGGCACTCAAAGTAATATGAATGCCAATGAGGTTATTGCTAATCGAGCTGCTGAGATCCTTGGCCATAAGCGTGGAGATAA GCACGTGCATCCAAATGACCATGTTAATAGATCTCAATCTTCTAACGACACTTTTCCAACTGTAATGCATATTGCCGCTGGAATGGAAATAAACTCGAGA TTAATTCCAAAACTAAAAACTTTGCACACTACCCTTCATTCCAAGACTGTTGAATTCAATGACATTGTCAAAATTGGTCGTACTCACACTCAAGATGCAA CGCCTTTGACACTCGGCCAGGAGTTTAGCGGCTATACCACCCAAGTGAAGTATGGAATTGATCGAGTCACGTGCACTCTGCCTCATATGTATCAGCTTGC ACAAGGCGGAACTGCAGTTGGCACCGGATTGAACACAAAGAAAGGGTTTGATGTAAAGATTGCTAGAGCAGTAGCCGAGGAGACGAACCTACCATTTGTG ACAGCTGAAAACAAGTTCGAAGCTCTGGCTGCACATGATGCTTTTGTTGAATGTAGTGGAGCTCTTAACACGCTTGCTACTTCTTTGATGAAGGTGGCCA ATGACATACGATTGTTGGGAAGTGGTCCAAGATGCGGTCTTGGTGAACTCATTCTTCCAGAAAATGAGCCAGGCAGCAGTATTATGCCGGGAAAAGTTAA CCCAACCCAGTGCGAGGCACTTACAATGGTCTGTGCTCAGGTTATGGGAAACCATGTGGCAATAACTGTCGGCGGAGCAAATGGCCACTTCGAATTAAAT GTTTTCAAGCCAATGATTGCAAGTGGTCTCCTGCATTCTGTAAGATTGCTTGGAGACGCCTCATCTTCTTTCGAAAAGAACTGCGTGAGGGGAATTCAAG CTAACAAAGAACGGATATCAAAGCTGCTGCATGAGTCACTTATGTTGGTTACATCATTGAATCCGAAAATTGGTTATGACAATGCTGCTGCAGTCGCTAA GCTTGCCCACAAGGAGGGAAGCACCCTGAAGGAAGCCGCACTGAAACTGGGAGTTCTGACCAGCGAAGAGTTTGATACATTGGTGGTACCGGAGAAGATG ATTGGACCAACCGACTGA
AA sequence Show only first row Show all	>Lus10028532 pacid=23166112 polypeptide=Lus10028532 locus=Lus10028532.g ID=Lus10028532.BGIv1.0 annot-version=v1.0 MIILVRLTVCDEGRRSLGLITSHIGDSSSSVLRCATPWRSFSTSFREERDTFGPIQVPSDKLWGAQTQRSLQNFDIGGERERMPEPIIRAFGILKKCAAK VNMDYGLDPTIGKAIMQAAQEVAEGKLNDHFPLFVWQTGSGTQSNMNANEVIANRAAEILGHKRGDKHVHPNDHVNRSQSSNDTFPTVMHIAAGMEINSR LIPKLKTLHTTLHSKTVEFNDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVTCTLPHMYQLAQGGTAVGTGLNTKKGFDVKIARAVAEETNLPFV TAENKFEALAAHDAFVECSGALNTLATSLMKVANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGANGHFELN VFKPMIASGLLHSVRLLGDASSSFEKNCVRGIQANKERISKLLHESLMLVTSLNPKIGYDNAAAVAKLAHKEGSTLKEAALKLGVLTSEEFDTLVVPEKM IGPTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	0	1
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	3.6	0.9402
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	5.3	0.9377
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10027091 [exp]	7.5	0.9158
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	7.8	0.8734
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	8.5	0.9220
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	8.7	0.9276
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	12.0	0.9239
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10018897 [exp]	13.7	0.8923
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	14.4	0.9247
					Lus10005395 [exp]	15.0	0.9135

Compare expression of checked genes

Lus10028532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.