Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13700 696 / 0 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G07130 645 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 483 / 8e-166 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT3G52820 303 / 3e-97 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 300 / 3e-96 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 291 / 1e-92 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 283 / 1e-89 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT2G16430 242 / 2e-73 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 236 / 2e-71 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G27190 234 / 1e-70 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011847 [exp] 678 / 0 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 674 / 0 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 670 / 0 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10016665 [exp] 595 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10009113 [exp] 393 / 1e-135 AT4G13700 259 / 3e-85 purple acid phosphatase 23 (.1) Lus10007119 [exp] 327 / 1e-107 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10021376 [exp] 303 / 3e-98 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017056 [exp] 298 / 4e-95 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 294 / 9e-94 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176000 [exp] 900 / 0 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.002G243900 [exp] 662 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055900 [exp] 660 / 0 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 587 / 0 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.011G138200 [exp] 285 / 2e-90 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 280 / 2e-88 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 265 / 2e-82 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 241 / 8e-73 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 234 / 1e-70 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 234 / 4e-70 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10028533 pacid=23166090 polypeptide=Lus10028533 locus=Lus10028533.g ID=Lus10028533.BGIv1.0 annot-version=v1.0 ATGGATTGGCGGGAAATGGCGGCCGTTTCCCTGCTTGTGATGGAGATTGTGGTCTCCCATACTTGGGCTATACCAACAACTCTTGATGGTCCCTTCCAGC CATTCACTCGCAGCTTTGATTCTTCTTTACGCAGAGGCAGCGACGACTTGCCCATGGATCACCCGAGGCTCATCAGAAATGTCACCGGGGATTTCCCTGA GCAGATTGCTTTTGCTGCTTCTTTTTCCCCTACTTCAATCTGGGTATCTTGGCTCACCGGTGAAGCGAAGATGGGTAGAAATGTGATTCCTCTGGATCCA GCTTCTGTAGGTAGTGAGGTTTGGTACGGTAAAGAGAGTGGCAAGTATACTGATAAAGTCACAGGAAATTCAACCGTATATTCTCAGTTGTATCCCTTTG AGGGCCTCTTGAATTACACCTCTCCCATCATCCACCATGTTAGAATTCATGGTCTCGAACCGGGGACAAGATATTACTACAAATGTGGGGACAGTTCCAT AACAGCTATGAGCGACGAGCTAAACTTTGAAACCATGCCATTGCCTGGTCCAGATTCATATCCTGCTCGAGTTGCAGTGGTTGGAGACCTTGGTCTCACA AAAAACTCTTCGTTGACTATAGATCATTTGACGATGAATGAACCATCGCTAATTTTAATGGTTGGAGATTTGACTTATGCAAATCAGTATCGCACAACCG GCGGGAAAGGAGCTTCGTGTTACTCATGTGCGTTCCCTGATTCGCCAATTAGAGAGACATTTCAACCTCGCTGGGATGCTTGGGGAAGGTTCATGGAGCC ATTGACTTCAAGCATTCCTATGATGGTCATCGAAGGCAACCATGAGATTGAGCCGCAAGCTTCTGGCCTTACTTTCGAATCATACTTGACCAGATTTGCA GTTCCAGCAGAGGAATCTGGCTCCAACAGCAATTTCTACTATTCCTTTGAAGCTGGAGGCATACACTTCATCATGCTTGGGGCATATATCAATTACAATA TTAGTGGTGCTCAGTATGCCTGGCTGCAGAAAGACTTGAACCAAGTGGACCGAAATAAGACACCATGGTTGGTTGCTGCATGGCATTCACCTTGGTACAA CAGCTACAGTTCACATTACCAGGAATTCGAGTGCATGAGGCAACAAATGGAAACACTTTTGTATCATCACAGTGTTGATGTTGTCTTTAATGGTCATGTA CATGCTTATGAACGGATGAATAGGGTCTACAACTACACATTAGACTCCTGCGGTCCGGTATACATAACGGTTGGAGATGGTGGGAATATAGAGGAAGTCG ACGTTGACCATGCAGATGACCCTGCAAAATGTCCTTCACCTGGAGACAACAAACCGGAATTTGGAGGTATTTGTCACATTAACTTCACATCAGGTCCTGC TAAGGGTAAATTCTGCTGGGACAGCCAGCCTGAATGGAGTGCATTTAGAGAAAGCAGCTTTGGCCATGGAATCCTTGAGGTTGTGAATTCTACATATGCA TTGTGGACATGGCACAGAAACCAGGAGAATTACAAGGATGACAAGATAGGGGATCAAGTGTACATAGTCCGACAGCCGGAATTGTGCATGAACAAGTCAG CCATCTCCAAAGGGAAAACCGGGACTGAGAAGGGAAGCTTAGCAAATGGAGGTGCAACTGCGACAGCAAACTGGAAGTGGAGCTTGTCCTTCGTCTTCAC TGTTGGTATTCGTTTGATCTGA
AA sequence Show only first row Show all	>Lus10028533 pacid=23166090 polypeptide=Lus10028533 locus=Lus10028533.g ID=Lus10028533.BGIv1.0 annot-version=v1.0 MDWREMAAVSLLVMEIVVSHTWAIPTTLDGPFQPFTRSFDSSLRRGSDDLPMDHPRLIRNVTGDFPEQIAFAASFSPTSIWVSWLTGEAKMGRNVIPLDP ASVGSEVWYGKESGKYTDKVTGNSTVYSQLYPFEGLLNYTSPIIHHVRIHGLEPGTRYYYKCGDSSITAMSDELNFETMPLPGPDSYPARVAVVGDLGLT KNSSLTIDHLTMNEPSLILMVGDLTYANQYRTTGGKGASCYSCAFPDSPIRETFQPRWDAWGRFMEPLTSSIPMMVIEGNHEIEPQASGLTFESYLTRFA VPAEESGSNSNFYYSFEAGGIHFIMLGAYINYNISGAQYAWLQKDLNQVDRNKTPWLVAAWHSPWYNSYSSHYQEFECMRQQMETLLYHHSVDVVFNGHV HAYERMNRVYNYTLDSCGPVYITVGDGGNIEEVDVDHADDPAKCPSPGDNKPEFGGICHINFTSGPAKGKFCWDSQPEWSAFRESSFGHGILEVVNSTYA LWTWHRNQENYKDDKIGDQVYIVRQPELCMNKSAISKGKTGTEKGSLANGGATATANWKWSLSFVFTVGIRLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Lus10028533 [exp]	0	1
AT1G03250			unknown protein		Lus10012370 [exp]	5.1	0.8709
AT1G13750			Purple acid phosphatases super...		Lus10036903 [exp]	7.3	0.8217
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	7.5	0.8739
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	11.7	0.8570
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	11.7	0.8655
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	14.4	0.8628
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	18.5	0.8273
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	22.2	0.8587
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10034832 [exp]	22.8	0.8268
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	27.0	0.8368

Compare expression of checked genes

Lus10028533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.