Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1) AT5G37870 122 / 1e-33 Protein with RING/U-box and TRAF-like domains (.1) AT1G66620 111 / 2e-29 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 107 / 3e-28 Protein with RING/U-box and TRAF-like domains (.1) AT5G37910 102 / 4e-26 Protein with RING/U-box and TRAF-like domains (.1) AT1G66650 100 / 5e-25 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 94 / 8e-23 Protein with RING/U-box and TRAF-like domains (.1) AT1G66630 89 / 7e-21 Protein with RING/U-box and TRAF-like domains (.1) AT5G37900 87 / 1e-20 TRAF-like superfamily protein (.1) AT1G66610 77 / 1e-16 TRAF-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009111 [exp] 442 / 2e-160 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10013739 [exp] 69 / 1e-13 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 69 / 1e-13 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10018110 [exp] 57 / 2e-09 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 57 / 2e-09 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 57 / 3e-09 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 56 / 3e-09 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 56 / 4e-09 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 56 / 4e-09 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148100 [exp] 248 / 4e-81 AT5G37930 206 / 4e-63 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G072800 [exp] 225 / 1e-72 AT5G37930 173 / 9e-51 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G091900 [exp] 210 / 6e-69 AT5G37930 143 / 3e-41 Protein with RING/U-box and TRAF-like domains (.1) Potri.017G122800 [exp] 179 / 2e-54 AT5G37930 180 / 5e-53 Protein with RING/U-box and TRAF-like domains (.1) Potri.004G091800 [exp] 135 / 2e-36 AT5G37930 81 / 4e-16 Protein with RING/U-box and TRAF-like domains (.1) Potri.001G010500 [exp] 61 / 6e-11 AT3G58040 455 / 3e-163 seven in absentia of Arabidopsis 2 (.1) Potri.003G215400 [exp] 60 / 1e-10 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 59 / 2e-10 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.016G059700 [exp] 59 / 3e-10 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.002G171500 [exp] 58 / 7e-10 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF03145 [flax] [poplar] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Lus10028535 pacid=23165972 polypeptide=Lus10028535 locus=Lus10028535.g ID=Lus10028535.BGIv1.0 annot-version=v1.0 ATGGCATACAAGTGCCCTTCATGTTGCTTGCCAATTGGCTACAATCGGTGTCGGGCAATCGAGAAGGTTCTAGAATCAGCCACCGTACGATGCTCAAATG CATCCAACGGCTGCAAAGAGATAATCACCTACAGCAAAAAACAAGCACACGACAAGGACTGCATCTATGCACCGTGTCAGTGTCCAATCTCCGGCTGCAA CTTCTCAGGCTCCGCCCAGCAGCTCTGCCACCATTTCACCTCCAACCACAAGAACCGCGCGGTACAGTTCCGGTACAACACCACCTTCCCAGCGTTCTTC ACCAGCGACCACAAGTTCCTCATTCTTCAGGAGGAGAAAGAAGAGGTTCTCTTCTTTCTGACCAACAGTGAAGAAGTAATCGGGAACATGATCTACGTTA GCTGTATAGGCCCCTCGTCGTACAAAGGGAAATTCTTCTACGAAGTGAGCGCGAAAACCGAGGACAGCAACCTTAAGTTTCAGGCCTTTACGGAGAACGT TCTGAAGAAGGGGAATGCCCCGCCTCCAGGTGGGTTCCTTGTAGTTCCGGCTAGCTACTTTGGCAGGTACAAGCAAGTCAGTCTAGATGTCTGCATATAT CAGGTCGAAACTTATCCTAGCGACTTTGTCCGTGCCACTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10028535 pacid=23165972 polypeptide=Lus10028535 locus=Lus10028535.g ID=Lus10028535.BGIv1.0 annot-version=v1.0 MAYKCPSCCLPIGYNRCRAIEKVLESATVRCSNASNGCKEIITYSKKQAHDKDCIYAPCQCPISGCNFSGSAQQLCHHFTSNHKNRAVQFRYNTTFPAFF TSDHKFLILQEEKEEVLFFLTNSEEVIGNMIYVSCIGPSSYKGKFFYEVSAKTEDSNLKFQAFTENVLKKGNAPPPGGFLVVPASYFGRYKQVSLDVCIY QVETYPSDFVRATAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	0	1
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	3.7	0.8151
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	6.9	0.8250
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10015177 [exp]	7.7	0.7811
AT4G17060		FIP2	FRIGIDA interacting protein 2 ...		Lus10001004 [exp]	9.3	0.8005
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	12.0	0.7787
AT2G28310			Protein of unknown function (D...		Lus10000145 [exp]	17.0	0.7025
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10032352 [exp]	17.3	0.7858
					Lus10031351 [exp]	17.7	0.7760
AT5G43490			unknown protein		Lus10003153 [exp]	18.4	0.7542
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029624 [exp]	18.7	0.7599

Compare expression of checked genes

Lus10028535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.