Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 322 / 8e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 319 / 9e-108 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 311 / 3e-104 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 305 / 2e-101 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 301 / 5e-100 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 295 / 3e-97 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 294 / 4e-97 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 291 / 7e-97 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 290 / 1e-95 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 288 / 1e-94 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009110 [exp] 442 / 3e-156 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 331 / 5e-112 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 327 / 4e-110 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 323 / 5e-110 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 312 / 1e-104 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 306 / 3e-101 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 301 / 5e-100 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 299 / 5e-100 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015877 [exp] 296 / 4e-99 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109400 [exp] 368 / 8e-127 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 338 / 5e-115 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 338 / 5e-115 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 320 / 3e-108 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 318 / 2e-107 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 318 / 2e-107 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 307 / 1e-102 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 300 / 8e-100 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 300 / 2e-99 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 298 / 7e-99 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10028536 pacid=23166114 polypeptide=Lus10028536 locus=Lus10028536.g ID=Lus10028536.BGIv1.0 annot-version=v1.0 ATGACATTCGAGAACACCGCCGGACCACAGAACCACCAAGCGGTTGCGCTCCGGTCGAGTTCGGACCTATCAGTGTTTTACAGGTGTAGCTTCAAGGGCT ACCAAGACACTTTATACGTCCACTCCCAACGCCAGTTCTACCGCGACTGCGACATTTACGGCACTGTTGACTTCATCTTCGGCGACGCCTCGGTCGTGCT TCAGAGCTGCAACATATACGTCAGAAGACCCATGAGTCACCAGAAGAACACCGTCACTGCTCAGGGAAGGACCGACCCCAACGAGAACACTGGCATCGTC ATTCAAAGTTCCAGGATCATGGCAGCTGCAGACCTGGAACAAGTGCAGGGGTCCTTCGAGACATATCTAGGGAGGCCATGGAAGCAGTACTCGAGGACAC TGGTGATAAAGAGCGCTATGGATGGATTTGTTGATCCCGCCGGATGGTTGCCGTGGAACGGAGAGTTTGCTCTGAGGACACTTTACTATGGAGAGTACAC GAATAGTGGGATCGGAGGAAGGACTCAGGGCAGAGTTTCCTGGCCTGGGTTTCACGTGATTAGAAGCGCTACTGAGGCCGGAAAGTTCACCGTCGGGAAT TTCCTGAACGGTGATGCTTGGATTCCGAGTAGTGGAGTGCCGTATGCCTCCGGTTTGTAA
AA sequence Show only first row Show all	>Lus10028536 pacid=23166114 polypeptide=Lus10028536 locus=Lus10028536.g ID=Lus10028536.BGIv1.0 annot-version=v1.0 MTFENTAGPQNHQAVALRSSSDLSVFYRCSFKGYQDTLYVHSQRQFYRDCDIYGTVDFIFGDASVVLQSCNIYVRRPMSHQKNTVTAQGRTDPNENTGIV IQSSRIMAAADLEQVQGSFETYLGRPWKQYSRTLVIKSAMDGFVDPAGWLPWNGEFALRTLYYGEYTNSGIGGRTQGRVSWPGFHVIRSATEAGKFTVGN FLNGDAWIPSSGVPYASGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	0	1
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	8.0	0.6709
AT1G47530			MATE efflux family protein (.1...		Lus10016296 [exp]	10.4	0.7910
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	15.5	0.6835
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10027432 [exp]	18.1	0.6417
AT1G08790			Protein of unknown function (D...		Lus10006560 [exp]	19.8	0.7428
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10036547 [exp]	32.9	0.6803
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	37.7	0.6555
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026138 [exp]	38.4	0.6771
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	40.9	0.6773
AT3G01570			Oleosin family protein (.1)		Lus10028035 [exp]	46.6	0.5198

Compare expression of checked genes

Lus10028536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.