Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77410 965 / 0 BGAL16 beta-galactosidase 16 (.1) AT5G63800 853 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT2G16730 759 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G36360 741 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT4G35010 736 / 0 BGAL11 beta-galactosidase 11 (.1) AT3G13750 719 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 695 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G38590 688 / 0 BGAL14 beta-galactosidase 14 (.1.2) AT2G32810 667 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G45130 659 / 0 BGAL5 beta-galactosidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018138 [exp] 1518 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 991 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10008259 [exp] 885 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10033502 [exp] 817 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10020875 [exp] 773 / 0 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10014126 [exp] 766 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10033500 [exp] 745 / 0 AT5G63800 757 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 744 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 736 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180600 [exp] 1146 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 1011 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 989 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G069200 [exp] 902 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 784 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.004G174800 [exp] 784 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.005G232600 [exp] 740 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 733 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 714 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 712 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10028538 pacid=23164526 polypeptide=Lus10028538 locus=Lus10028538.g ID=Lus10028538.BGIv1.0 annot-version=v1.0 ATGGCTGTAGCGGCGACGGTGGCAGTGGTAATAGTAATGTTGACAACGGCGATGAACGGAATTGATGCAGTGGGAATTGATCACGATCATCATCATCTTT CAACCGTTGGTAGGATGAATGGTAGTGATCAAGGAGTGAGCTATGACGGGAGGTCTCTGATCATCAACGGCCACCACCGGATTCTCTTCTCCGGCTCCAT CCATTATCCACGCAGCACTCCCGAGATGTGGCCATCGTTAATATCAAAGGCCAAAGAAGGAGGGCTAGACGTCATACAGACGTACGTATTCTGGAACTTG CATGAACCCAAACAAGGACAGTTTGATTTCACTGGAAGAGCAGACATTGTAAGATTCATCAAGGAAATCCATGCTCAGGGACTCTACGTCACTCTCCGAA TCGGACCCTTCATCGAGTCCGAATGGACTTACGGGGGGTTCCCCTTCTGGTTACATGATATTCCAGGCATTGAGTTCAGATCAGACAACAAACCATTCAA GGACCACATGCAAAGATACGTAGGGAAGATAGTGAACTTGATGAAAGCAGAGAATCTGTATGCGTCGCAGGGAGGTCCAATCATACTATCACAGGTCGAG AACGAGTACCAGACTATAGAATCAGCTTATCGTGAGAAAGGACCTTCGTACGTTCGTTGGGCTGCAGGCATGGCAGTTCAGCTTCAAACTGGTGTGCCCT GGGTGATGTGCAAGCAAGATGATGCGCCGGATCCAGTGATTAATACCTGCAACGGATATAAATGTGATCAGACGTTTAACGGAGCCAACTCGCCTAATAA GCCATCCATGTGGACAGAAAACTGGACAAGTTTCTTGCAGGTATATGGTAATGAAACCAAAAGGAGAGCAGTCCAAGACATAGCGTTTCATGTCGCCTTG TTCATAGCCAGGAAAGGAAGTTATGTAAACTATTACATGTATCATGGAGGAACAACTTTCGGAAGAAAGGCAGCTGCTTTTGTGACAACAAGTTACTACG ATGAAGCACCTATAGATGAGTATGGTTTAATCAGGCAGCCAAAATGGGGTCATCTTAAGGAGTTACATGCCACAATAAAGTCATGCTCGCGGTCTTTGCT CACTGGGGTTCAAAAGTCATTCCCTTTGGGTCAACAACAGGACGCTTATGTATTTAGAGGAGCTTCAGGGGAGTGTACTGCCTTTCTGGTAAACAAGAAC AGAACAAAAGTTGCTAGAGTTGTGTTCCAGAACACTACGTACTTACTGCCTCGGAGATCAATAAGCATTTTACCAGACTGCAAGACTGTTGCTTTCAACA CAGCAAAGCTAACAGCACAGCGGAATACACGATCAATGATACTGAGACAACAGCTAAGTTCAACCGACAAATGGCAAGAGTATAAAGAAACCATCCCTGA TTTTGACAGCACTGCTATCAAAGCAGACAAATTGTTGGATCAACTGAGTATGACAAAGGATACCTCTGACTACCTATGGTATACTTTCAGGTTCACCAGA AATTCAACAAGCACAAAATCCATGCTCAATGTCCATTCACATGGACATGTGCTGCATGCATATGTCAACGGAGTAAATCAAGGTAATACGCTTCAATCAG GTATAAGAGTATACACAAGAGATCTACGGTACTGGTCTGCACATGGAAGTCATAGGCAACGAGTCTTCATTCTTGAGAAACCAATTGACCTACAGGAAGG AGTAAACAACATTGCCTTACTTAGTGCAACAGTTGGATTTCCGGATTCAGGAGCATACCTTGAGCGTAAGGTTGCCGGACTACGCAGAGTCAGCACTGAT GACAGAGATTTCACCAACTACGCATGGGGCTATCAGGTTGGTTTGCTAGGAGAGAGGTTACAAGTTTACACAGATGATGGGCAAAACAGAGTTCATTGGA ATGATTTTGGGAGCTCTGTTCATCATTCACTTACATGGTACAAGACAGTTTTTGATGCACCAGCAGGCAGAGATCCAGTTGCTTTGGACCTAAGCTCCAT GGGAAAAGGTGAAGCTTGGGTCAATGGACAAAGTATAGGGAGATATTGGATGTCATATCGTACTCCGAGAGGACAACCTTCACAAACATGGTATCACATC CCTCGGTCTTTCCTGGAACCAACCGGGAACGTGTTAGTCTTGCTGGAAGAAGAAACAGGGTTCCCGCCTGGGATTACAGTAAATACTGTTTCAATCACCA AAGTGTGTCAGTATGCTTCCGAAACGCACGTATCCGTGGTCCAGCTTAGTTGTCCTCAAAACCAAACAATATCTAAAATACTATTTGCAAGTTTTGGAGC TCCTTTGGGTGATTGTAAAAGCTATTCCTTCAGCAAATGTCACTCACCTAATTCTAGACACATTGTAGAGAAGCTTCACAAGAATAGCTGGCTCAGTATA GCTTTCTTCTCATTCCCAGCAGAATATTCTGTTTATTACAAACTCCCAGTAGACATTTTATTCTCTATCGACTTGCAGAACCCTAACAGTAAAATACTTT CTCAGGCTTGCGTAGGGAAGGAGGACTGTACCATAAGCCTCTCAAAACAAAATTTTGGTGGTGATCCATGTCCGCGGATCCCCAAAGTTCTGCTGGTCGA TGCCCGATGCTCATGA
AA sequence Show only first row Show all	>Lus10028538 pacid=23164526 polypeptide=Lus10028538 locus=Lus10028538.g ID=Lus10028538.BGIv1.0 annot-version=v1.0 MAVAATVAVVIVMLTTAMNGIDAVGIDHDHHHLSTVGRMNGSDQGVSYDGRSLIINGHHRILFSGSIHYPRSTPEMWPSLISKAKEGGLDVIQTYVFWNL HEPKQGQFDFTGRADIVRFIKEIHAQGLYVTLRIGPFIESEWTYGGFPFWLHDIPGIEFRSDNKPFKDHMQRYVGKIVNLMKAENLYASQGGPIILSQVE NEYQTIESAYREKGPSYVRWAAGMAVQLQTGVPWVMCKQDDAPDPVINTCNGYKCDQTFNGANSPNKPSMWTENWTSFLQVYGNETKRRAVQDIAFHVAL FIARKGSYVNYYMYHGGTTFGRKAAAFVTTSYYDEAPIDEYGLIRQPKWGHLKELHATIKSCSRSLLTGVQKSFPLGQQQDAYVFRGASGECTAFLVNKN RTKVARVVFQNTTYLLPRRSISILPDCKTVAFNTAKLTAQRNTRSMILRQQLSSTDKWQEYKETIPDFDSTAIKADKLLDQLSMTKDTSDYLWYTFRFTR NSTSTKSMLNVHSHGHVLHAYVNGVNQGNTLQSGIRVYTRDLRYWSAHGSHRQRVFILEKPIDLQEGVNNIALLSATVGFPDSGAYLERKVAGLRRVSTD DRDFTNYAWGYQVGLLGERLQVYTDDGQNRVHWNDFGSSVHHSLTWYKTVFDAPAGRDPVALDLSSMGKGEAWVNGQSIGRYWMSYRTPRGQPSQTWYHI PRSFLEPTGNVLVLLEEETGFPPGITVNTVSITKVCQYASETHVSVVQLSCPQNQTISKILFASFGAPLGDCKSYSFSKCHSPNSRHIVEKLHKNSWLSI AFFSFPAEYSVYYKLPVDILFSIDLQNPNSKILSQACVGKEDCTISLSKQNFGGDPCPRIPKVLLVDARCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	0	1
					Lus10029790 [exp]	2.4	0.8899
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	3.0	0.8846
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	9.7	0.8903
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	11.0	0.8462
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	11.3	0.8780
AT2G41750			DTW domain-containing protein ...		Lus10012192 [exp]	12.2	0.8790
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031872 [exp]	13.8	0.8149
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10035434 [exp]	14.9	0.8552
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	15.5	0.8703
AT5G57500			Galactosyltransferase family p...		Lus10000407 [exp]	17.9	0.8659

Compare expression of checked genes

Lus10028538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.