Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21710 455 / 4e-160 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) AT3G47830 55 / 4e-08 DNA glycosylase superfamily protein (.1) AT4G34060 44 / 0.0002 DML3 demeter-like protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018137 [exp] 666 / 0 AT1G21710 461 / 7e-162 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Lus10034120 [exp] 50 / 2e-06 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 45 / 9e-05 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180700 [exp] 496 / 9e-176 AT1G21710 452 / 1e-159 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Potri.015G071300 [exp] 48 / 6e-06 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein CL0407 [flax] [poplar] TBP-like PF07934 [flax] [poplar] OGG_N 8-oxoguanine DNA glycosylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028539 pacid=23164498 polypeptide=Lus10028539 locus=Lus10028539.g ID=Lus10028539.BGIv1.0 annot-version=v1.0 ATGAAGAGAGCAAGACTGACCACGGCGACAGCCGTCACCGTCAAACCACCGGCGGTGCCCCTTCAACCGCCGGCGGCGCCTATTCCTCCAACGCCGCCGC AAACTACACAAGCTCTCCTCAGGAAACCTAGAAAAGCAATCTCGGACCATCGCGCAGCTGCAGCATCGAACTCCACAACCTGGTCCCCGCTCAACCTAAG CCAATCGGAACTCTATCTCCCGCTCACATTCCCCACTGGACAGACCTTCCGCTGGAAGAAAACCGGCGATATCCAGTACACCGGCGCCCTCGGTCCTCAT TTGATCTCTCTTAAGCACCAGGAGGATGAAACCGGCGACGTTTATTACCACGTTCATCGCACGCCGTCGCGATCCGACGCGGAATCGGCGCTCCGTGACT TCCTCAACTTCGAGGCATCCCTCGCCGAAATTTGGCGGGAGTTTTCAGCCTCCGATCCGAGATTCGCTAATCTGGCGACTCACCTGAAGGGAGCTAGGGT TCTGAGGCAGGATCCGTTGGAGTGTTTGGTTCAGTTCCTGTGCTCATCGAACAATAATATCGGCCGGATTACTAAGATGGTGAACTTTCTCTCGTCGTTG GGGGAGCATTTGGGGACCGTTGGGGATTTTGAATTTCATGAGTTCCCGTCTCTGGAGAGGTTGGCCTTGGTTACTGAGCAGCAGCTTAGAGAAGCTGGTT TTGGTTATAGGGCGAAGTATATTACTGGGACGGTAGATGCTTTGCAGTCAAAACCAGGCGGAGGTTCAGCTTGGCTTGATTCTCTGCGTAAATTGGAGCT GCAAGTTGTGATTGATGCTTTGATTACTTTGCCTGGAGTTGGTCCCAAAGTAGCGGCTTGCATTGCTCTCTTCTCCCTTGATCAACACCATGCCATTCCT GTTGATACCCATGTGTGGCAGATTGCTACAAGGTACCTCCTACCCGAGCTTGCAGGTACAAAGCTGACACCGAAGCTATGTGTTCGTGTTGCTGATGCAT TCGTGGCGAAGTATGGCAAATATGCTGGCTGGGCGCAGACTTTACTTTTCATAGCTGAATTGCCTCCGCAGAAAGCTCTCGTCTCATCAGATTCAAGGTC TCCCGAGGATACTAAATCTATGGGAAAGAAGGACAAGAAGTCGCAGAAACGTGAGATAGTTTTTCCCCTAAAAGTCTCCTTTTCAAGTAATGGATTGTGT GGTTACCTTCGTTATCGGGCTACTTTCAAGAGTGATGATGGTCAACTTCAAGTTCTGAGGTGA
AA sequence Show only first row Show all	>Lus10028539 pacid=23164498 polypeptide=Lus10028539 locus=Lus10028539.g ID=Lus10028539.BGIv1.0 annot-version=v1.0 MKRARLTTATAVTVKPPAVPLQPPAAPIPPTPPQTTQALLRKPRKAISDHRAAAASNSTTWSPLNLSQSELYLPLTFPTGQTFRWKKTGDIQYTGALGPH LISLKHQEDETGDVYYHVHRTPSRSDAESALRDFLNFEASLAEIWREFSASDPRFANLATHLKGARVLRQDPLECLVQFLCSSNNNIGRITKMVNFLSSL GEHLGTVGDFEFHEFPSLERLALVTEQQLREAGFGYRAKYITGTVDALQSKPGGGSAWLDSLRKLELQVVIDALITLPGVGPKVAACIALFSLDQHHAIP VDTHVWQIATRYLLPELAGTKLTPKLCVRVADAFVAKYGKYAGWAQTLLFIAELPPQKALVSSDSRSPEDTKSMGKKDKKSQKREIVFPLKVSFSSNGLC GYLRYRATFKSDDGQLQVLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10028539 [exp]	0	1
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	5.4	0.8180
AT4G36680			Tetratricopeptide repeat (TPR)...		Lus10024025 [exp]	7.3	0.8116
AT4G29840		TS, MTO2	THREONINE SYNTHASE, METHIONINE...		Lus10003317 [exp]	9.2	0.7993
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10020777 [exp]	12.0	0.7796
AT3G58610			ketol-acid reductoisomerase (....		Lus10022849 [exp]	21.9	0.7683
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	23.2	0.7927
AT4G02720			unknown protein		Lus10022052 [exp]	27.1	0.7763
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	28.3	0.7704
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	30.6	0.7794
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	39.8	0.7524

Compare expression of checked genes

Lus10028539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.