Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 504 / 3e-170 MATE efflux family protein (.1) AT1G15150 497 / 3e-167 MATE efflux family protein (.1) AT1G71140 486 / 6e-163 MATE efflux family protein (.1) AT1G15180 485 / 8e-163 MATE efflux family protein (.1.2) AT1G15160 485 / 1e-162 MATE efflux family protein (.1) AT1G66760 426 / 9e-140 MATE efflux family protein (.1.2) AT2G04080 421 / 5e-138 MATE efflux family protein (.1) AT2G04100 421 / 5e-138 MATE efflux family protein (.1) AT2G04090 418 / 9e-137 MATE efflux family protein (.1) AT2G04050 415 / 9e-136 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018134 [exp] 1673 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 648 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 645 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 636 / 0 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10029694 [exp] 635 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 605 / 0 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 473 / 2e-157 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 464 / 3e-154 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 422 / 5e-138 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126500 [exp] 608 / 0 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 586 / 0 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 573 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 475 / 7e-159 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 455 / 6e-151 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.004G094900 [exp] 437 / 4e-144 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120500 [exp] 434 / 3e-143 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.017G120600 [exp] 428 / 1e-140 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094800 [exp] 421 / 2e-138 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120400 [exp] 417 / 2e-136 AT2G04100 508 / 3e-178 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10028540 pacid=23164467 polypeptide=Lus10028540 locus=Lus10028540.g ID=Lus10028540.BGIv1.0 annot-version=v1.0 ATGAGCGCGGAGCGGCAGAGCTTGCTTCTGCCGGAGAAACAATTCGCCTCTTCCGCCGATGACGACAACGACGCAAGCGCGGGGTTAATCCGTCGGGAGC TGAAAGAGCTAGGGTACATAGCAGGCCCGATGGTGGCGATGAATCTATCCCAGTACATGCTGCAAATCACGTCGCTGATGATGGTAGGACACATCGGCCA GCTGGAACTCTCCGCCATCGCTATTGCCGTCTCTTTGTTCACCGTCACCGGCTCCAGCGTCCTCATTGGGATGTCGAGTGCCTTGGAAACCCTGTGTGGC CAAGCCTATGGAGCTAAGCAATACAAGAAACTTGCAACGCAAACTTACACTGCAATATTCTGCCTATTATTAGCCAGCATTCCCATTTCCTTGCTCTGGA TCAACATGGAGAGCGTACTTGTTTTAGCTGGCCAAGATCCCACCATCTCACGTGAAGTTGGGAAGCTCCAGATATGGCTGATTCCGTCTCTATTTGCTTA TGCAATGGTCCAGCCGGTCGTTCGATACCTCCAAGTGCAAAGCTTGGTGCTCCCCATGCTAACGACTGCTGTTATTTCGCTTGCTTTCCATCTACCAGTA TGCTGGTTTTTGGTGTTCAGGACTAACCTGCGGGAAGTGGGAGCAGCATTGGCAATTTGCTTGTCGAATTGGTTGACCTTTGTTGGTCTCGCGGTTTATG TGAAGTACTCGCCTGCATGTGCCAAGACTAGGGCTCCTATTTCTATGGAGACGTTCCGTGGTATTGGCGTGTTCTTCCGTTATGCCATCCCTTCTGCTTT CATGCTCTGCTTGGAGTGGTGGTCGTTTGAGCTTGTGGTTCTGCTTTCGGGTTTACTCCCAAATCCCGTGCTTGAAACATCAGTCCTATCAGTGTGTCTC AGCACCACTTCAACTTTCTACTCAATACCATTTGGACTTGGTGCTGCAGCTAGCACTAGAGTCTCAAATGAGCTAGGAAGAGGGAGACCAGAAGCGGCTC GAAGATCAGTAAGCTGTGTGCTATCCATTGCAGCGACTGAGGCTCTATTACTGAGTGGTGCCCTATTTCTATGCCGCCATGTATTTGGTTATAGCTTCAG CAATGACAAGGAAGTGGTTGACTATGTCACCAAGATGGCTCCTCTGTTATGCTTGTCAATGATAATGGACAGTTTGCAAGGTGTTCTTTCAGGAATTGCA AGGGGGTGTGGATGGCAGGATATAGGAGCTTATGTCAACCTCGGAGCCTTCTATCTAATCGGCATTCCTGTAGGAGTTTTGTTGGGTTTCTGGACAGACC TAAGAGGGATGGGTCTTTGGATTGGAGTGCTAGTTGGTTCATTTGCACAGACACTACTTCTGTTCCTTGTTACAATTTGCACTAACTGGGAAAAACAGGG GATGGAAGAAGTGGGGAACTATGATGAAATGAAAGAAAGCTTGATTCCCAAAGAGAGGGAAGAAGGAAGAGATGATACATGGGGTGTTTATATCCAGGAA GCTAAGAAGCTTGGTTACATAGCAGTGCCTATGGTTGCTGTGAATCTATCGATGTGCGCACTGAACGTCATGTCGCTGATGATGGTTGGTCATCTAGGTG AGCTAGCCCTTTCTAGCTCTGCCATTGCCATCTCTCTTTCCAATGTCACCTGCTTCAGCCTTCTGGTAGGAATGTCAAGTGCTCTAGAAACACTATGCGG ACAAGCTTATGGAGCACAGCAATACAGGAAGCTTGGAATGCAAACATACAGTGCCATCTTCTCCTTGCTCTTGGTTTGCATCGTTCTTTCTTTACCATGG TTCAATATGGAGTGGATTTTGGTGCAAATTGGTCAGGATCCCATCGTCGCTCATGAAGCTGGTGTCTTCACAAGGTGGCTTGTGCCTGCATTTTTCGCTG CTGCAATGTATCAGCCTCTGGTCAGGTACTACCTGGCACAAAGTCTAATAATTCCAATGCTGATGTGCTCCTCCCTCACAATCACTCTCCACATTCCTCT CTCTTGGTTTTTGATCTTCAAATCTGGACTCAACAACCTTGGCGGTGCACTTTCAGTAGGCATATCCTACTGGTTGAATGTGATCTTTCTTCTAATTTTC ATGGCTTTCTCTCCCTCCTGTGCAAAAACTCGCGTTCCGATTTCCACGGAGTTATTCCAAGGAATCGGTGAGTTCTTCCGTCTCGCTGTCCCTTCTGCAA CCATGATTTGCCTGCAATGGTGGTCTTATGAGGTTGTAATCATGCTATCAGGACTGTTGCCTAATCCACAACTCCAGACCTCAGTCCTCTCCATTTGCCT CACGACAATTGGAACACTCTATGCTATACCATATGGACTAGGTGCTGCAGTAAGCACTAGAGTTGCGAACGAGCTAGGATCGGGGAACACACGAGCTGCT CGAAGATCAGTGCACACAGTCATAACCCTGGCAGTTGCAGAGCTAGCTATAGTGAGTGGAATCCTCTTCACAGGGAGACAAGTATTTGGATACTCATTCA GTAGTGACGTAGATGTTGTGAAGCATGTCTCTAACATGGCTCCTCTGGTTTGCCTCGCCGTCATCGTGGATGGCTTACAAGAAATCCTTTCAGGAGTTGC TAGAGGATGTGGGTGGCAGCATATTGGAGCATATGTGAATCTTGCTGCATTATATATCTGTGGAATTCCAGTAGCTGGTTTGCTGGGATTTTGGTTCCAA CTTGATGGCAAAGGGCTATGGATTGGGATTCAAGTTGGCGCCACTTTACAAACTCTTCTTCTTGCTCTGGTCACTGGCTGCATCAATTGGGAGAATCAGG TTTGGCGAAACTCGCAGCTCTCTCGATTATAA
AA sequence Show only first row Show all	>Lus10028540 pacid=23164467 polypeptide=Lus10028540 locus=Lus10028540.g ID=Lus10028540.BGIv1.0 annot-version=v1.0 MSAERQSLLLPEKQFASSADDDNDASAGLIRRELKELGYIAGPMVAMNLSQYMLQITSLMMVGHIGQLELSAIAIAVSLFTVTGSSVLIGMSSALETLCG QAYGAKQYKKLATQTYTAIFCLLLASIPISLLWINMESVLVLAGQDPTISREVGKLQIWLIPSLFAYAMVQPVVRYLQVQSLVLPMLTTAVISLAFHLPV CWFLVFRTNLREVGAALAICLSNWLTFVGLAVYVKYSPACAKTRAPISMETFRGIGVFFRYAIPSAFMLCLEWWSFELVVLLSGLLPNPVLETSVLSVCL STTSTFYSIPFGLGAAASTRVSNELGRGRPEAARRSVSCVLSIAATEALLLSGALFLCRHVFGYSFSNDKEVVDYVTKMAPLLCLSMIMDSLQGVLSGIA RGCGWQDIGAYVNLGAFYLIGIPVGVLLGFWTDLRGMGLWIGVLVGSFAQTLLLFLVTICTNWEKQGMEEVGNYDEMKESLIPKEREEGRDDTWGVYIQE AKKLGYIAVPMVAVNLSMCALNVMSLMMVGHLGELALSSSAIAISLSNVTCFSLLVGMSSALETLCGQAYGAQQYRKLGMQTYSAIFSLLLVCIVLSLPW FNMEWILVQIGQDPIVAHEAGVFTRWLVPAFFAAAMYQPLVRYYLAQSLIIPMLMCSSLTITLHIPLSWFLIFKSGLNNLGGALSVGISYWLNVIFLLIF MAFSPSCAKTRVPISTELFQGIGEFFRLAVPSATMICLQWWSYEVVIMLSGLLPNPQLQTSVLSICLTTIGTLYAIPYGLGAAVSTRVANELGSGNTRAA RRSVHTVITLAVAELAIVSGILFTGRQVFGYSFSSDVDVVKHVSNMAPLVCLAVIVDGLQEILSGVARGCGWQHIGAYVNLAALYICGIPVAGLLGFWFQ LDGKGLWIGIQVGATLQTLLLALVTGCINWENQVWRNSQLSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	0	1
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	1.0	0.9811
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10025656 [exp]	1.4	0.9766
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	6.5	0.9746
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10038049 [exp]	7.7	0.9657
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	7.7	0.9742
AT5G38210			Protein kinase family protein ...		Lus10028495 [exp]	8.9	0.9744
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	9.2	0.9739
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	9.5	0.9739
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	9.8	0.9682
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	9.9	0.9687

Compare expression of checked genes

Lus10028540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.