Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44050 245 / 2e-82 COS1 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018133 [exp] 361 / 6e-128 AT2G44050 289 / 1e-99 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Lus10043431 [exp] 244 / 3e-79 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10034145 [exp] 242 / 2e-78 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10000192 [exp] 165 / 7e-52 AT2G44050 148 / 1e-45 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001800 [exp] 248 / 2e-83 AT2G44050 291 / 1e-100 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1) Potri.007G146000 [exp] 241 / 6e-81 AT2G44050 279 / 6e-96 coronatine insensitive1 suppressor, COI1 SUPPRESSOR1, 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00885 [flax] [poplar] DMRL_synthase 6,7-dimethyl-8-ribityllumazine synthase
Representative CDS sequence Show only first row Show all	>Lus10028541 pacid=23164493 polypeptide=Lus10028541 locus=Lus10028541.g ID=Lus10028541.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTGTTGACATCTCCGTCCACCAAAACATCCTCGTCTCTTCTCATCAACCACCGCAGTCAACGCCGCCGATGCCACATCACAACCATCAACT ACCTCTCCATCTCCTCCTCCTCTAATTCCCCCGTCTCCGTTCCGCAGCCTCACCAAGGGTTTGGGAATGCACGCGCTCTTACTCCCGTCGTAGCGAAACG GCAATCGTCGCTTCTGGAAGCGCCGGAAGCTGTAAAGCATGTTGTTGGATCGCTTACACGAGCTGAAGGGCTCCGATTTGCTGTGGTGGTTGCGCGGTTC AACGAGATAGTGACTAGGCGGCTGTTAGAAGGAGCTATCGAGACTTTCACGAGGTACTCCGTCAACGAAGAAGACATCGATGTTGTTTGGGTTCCAGGTA GTTTTGAAGTAGGTGTAGTTGCAGAGAAGCTAGGCAAGTCAGGGAAGTATAATGCAGTGTTGTGTATTGGAGCTGTGATAAGAGGTGACACCTCTCATTA TGATGCTGTTGCGAATTCCGCTGCATCCGGAGTACTGTCAGCTGGTCTAAACTCAGGAGTCCCATGTATATTTGGTGTCCTTACATGTGAAGACATGGAC CAGGCTCTCAACCGGGCTGGCGGGAAAGCCGGTAACAAAGGTGCTGAGGCTGCTTTGACCGCTATTGAGATGGCATCCTTGTTCGAGCATCACTTGAAGG ACTGCTAA
AA sequence Show only first row Show all	>Lus10028541 pacid=23164493 polypeptide=Lus10028541 locus=Lus10028541.g ID=Lus10028541.BGIv1.0 annot-version=v1.0 MASLLTSPSTKTSSSLLINHRSQRRRCHITTINYLSISSSSNSPVSVPQPHQGFGNARALTPVVAKRQSSLLEAPEAVKHVVGSLTRAEGLRFAVVVARF NEIVTRRLLEGAIETFTRYSVNEEDIDVVWVPGSFEVGVVAEKLGKSGKYNAVLCIGAVIRGDTSHYDAVANSAASGVLSAGLNSGVPCIFGVLTCEDMD QALNRAGGKAGNKGAEAALTAIEMASLFEHHLKDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10028541 [exp]	0	1
					Lus10023559 [exp]	7.1	0.9127
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	12.0	0.9071
AT1G42960			unknown protein		Lus10012242 [exp]	15.4	0.9070
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032132 [exp]	20.2	0.8688
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038635 [exp]	25.6	0.8865
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10034549 [exp]	26.0	0.8980
AT4G16450			unknown protein		Lus10039057 [exp]	27.7	0.8811
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009432 [exp]	28.9	0.8548
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10027800 [exp]	31.5	0.8974
AT2G34590			Transketolase family protein (...		Lus10023304 [exp]	36.8	0.8874

Compare expression of checked genes

Lus10028541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.