Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44110 475 / 2e-166 CYCA1;1 Cyclin A1;1 (.1) AT1G77390 423 / 2e-146 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT5G11300 319 / 1e-105 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT5G25380 318 / 2e-105 CYCA2;1 cyclin a2;1 (.1) AT1G80370 317 / 2e-104 CYCA2;4 Cyclin A2;4 (.1) AT1G15570 312 / 6e-103 CYCA2;3 CYCLIN A2;3 (.1) AT5G43080 303 / 1e-100 CYCA3;1 Cyclin A3;1 (.1) AT1G47210 293 / 2e-96 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47230 291 / 8e-96 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47220 268 / 2e-87 CYCA3;3 Cyclin A3;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029700 [exp] 525 / 0 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10014199 [exp] 518 / 0 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10042739 [exp] 490 / 3e-171 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10008103 [exp] 328 / 1e-108 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10024822 [exp] 293 / 8e-96 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10018715 [exp] 291 / 4e-95 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10013886 [exp] 259 / 3e-83 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10026598 [exp] 228 / 1e-72 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10012261 [exp] 203 / 2e-60 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080000 [exp] 549 / 0 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.005G181400 [exp] 545 / 0 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.014G021100 [exp] 317 / 7e-106 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.018G034100 [exp] 320 / 2e-105 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.002G121500 [exp] 312 / 4e-104 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.006G247200 [exp] 315 / 2e-103 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 306 / 3e-100 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 296 / 2e-96 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.009G093100 [exp] 271 / 2e-87 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.009G165800 [exp] 197 / 5e-59 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028544 pacid=23164502 polypeptide=Lus10028544 locus=Lus10028544.g ID=Lus10028544.BGIv1.0 annot-version=v1.0 ATGCAGACTCGTCGTCCGTCGTTTTCTTCCTCAACGACGTCGTCTCTCGCCAATACCGGGAAGAATACGGCGGCAGTTTCTGTCAGTGATGCTCCTCTGA CGAAGATGACGGCGACGACTACTACTAATTTGGGAAGGAAGCGGGCTCCTCTTGGTGACATCACCAACAACCGTAGTAGGATTAACGCTTCTAAGAATGG GTCCAAACCCGCTTTCCCTTCTTCCAACCTGGATCAGAACTCGACCAAAACTGCTTGTAAAGTCGCACCAGCAACAAACAACAAGGACGATGCAGTTGTT TCGAGCAAATCGGATGGAGTCTCGATCTCCATGGACGAAACCATGTCGACTTGTGATTCCTACAAGGGTGCCAATGACAAGATCGTGAACATCGATACAG ATGTTGAGGACCCTCAGCTTTGTGTGACCAATGCTTGTGATATCTACAAGCATTTGAGAGCTTCTGAGAATAAGAAAAGACCAGCAGCAAATTTCATGGA GAGAACTCAGAAGGACATAAACGCCAGTATGCGAGCAATTCTCATTGATTGGCTTGTCGAGGTTGCTGAAGAGTATAAACTTGTTCCTGACACATTGTAT CTGACGGTTAACTATATCGATCGGTATCTTTCGGGGAATGTGATTAACAGGCAGAGATTGCAGCTGCTTGGTGTTGCCTGCATGATGATTGCTTCAAAAT ATGAGGAAATATGTGCACCACAGGTCGAGGAGTTCTGTTACATCACTGATAACACATATTTCAAGGATGAGCTTTTGGAAATGGAATCAGCTGTTTTGAG TTACTTAAAGTTCGAAATGACAGCACCAACAGCCAAATGCTTCCTAAGGCGATTCATAAGAGCTGCTCAAGGACTCGACGAGGTTCCATCTATGCAGCTG GAATGCTTAACCAACTACATATCCGAGCTCTCTCTACTGGAGTACGACATGGTTCGCTACGCTCCATCGATAGTCGCAGCCTCGTCCATCTTCTTAGCCA AGTTCATCCTCTTCCCATCCAAGAGACCATGGAACTCGACCTTGCAACATTACACACTTTACCAGCCTAGTGATCTTCTCAACTGTATAAAAGATCTCCA CCGCCTTTGTTGCAACAATAATAACCCTACCTTACCGGCAATCAGTGAAAAGTACAGCACTCATAAGTACAAATTTGTAGCCAAGAAGTTCTGCCCTCCT CATATACCTGAGCAGTACTTCCACAAACTAAGCTAG
AA sequence Show only first row Show all	>Lus10028544 pacid=23164502 polypeptide=Lus10028544 locus=Lus10028544.g ID=Lus10028544.BGIv1.0 annot-version=v1.0 MQTRRPSFSSSTTSSLANTGKNTAAVSVSDAPLTKMTATTTTNLGRKRAPLGDITNNRSRINASKNGSKPAFPSSNLDQNSTKTACKVAPATNNKDDAVV SSKSDGVSISMDETMSTCDSYKGANDKIVNIDTDVEDPQLCVTNACDIYKHLRASENKKRPAANFMERTQKDINASMRAILIDWLVEVAEEYKLVPDTLY LTVNYIDRYLSGNVINRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDELLEMESAVLSYLKFEMTAPTAKCFLRRFIRAAQGLDEVPSMQL ECLTNYISELSLLEYDMVRYAPSIVAASSIFLAKFILFPSKRPWNSTLQHYTLYQPSDLLNCIKDLHRLCCNNNNPTLPAISEKYSTHKYKFVAKKFCPP HIPEQYFHKLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10028544 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	1.0	0.9638
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	2.4	0.9517
AT4G17240			unknown protein		Lus10038797 [exp]	3.9	0.9314
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10032567 [exp]	4.5	0.9230
AT4G13690			unknown protein		Lus10000756 [exp]	5.5	0.9405
AT3G27360			Histone superfamily protein (....		Lus10031821 [exp]	8.5	0.9267
AT3G48900			single-stranded DNA endonuclea...		Lus10027451 [exp]	9.6	0.8920
AT5G12360			unknown protein		Lus10038810 [exp]	11.3	0.9335
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10023396 [exp]	12.0	0.8603
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10016156 [exp]	13.3	0.9070

Compare expression of checked genes

Lus10028544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.