Plant FIBer expression Database

Lus10028545 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21680 857 / 0 DPP6 N-terminal domain-like protein (.1)
AT1G21670 712 / 0 unknown protein
AT4G01870 426 / 1e-140 tolB protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038052
[exp]
428 / 3e-141 AT4G01870 825 / 0.0 tolB protein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G079900
[exp]
908 / 0 AT1G21680 936 / 0.0 DPP6 N-terminal domain-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07676 PD40 WD40-like Beta Propeller Repeat
Representative CDS sequence
>Lus10028545 pacid=23164643 polypeptide=Lus10028545 locus=Lus10028545.g ID=Lus10028545.BGIv1.0 annot-version=v1.0
ATGGAGATCAATCTCCAAATCCTCTGTTTCTTCCTCTTCAATCTCTTCCTCACAATTCAATCTTCACCCACAAGCATCATCGTCACCACCCTCGGAAGAT
CCAGCTACGCCTTCGACCTCTTCACTCTCCCCACGAGCCACCGCAGCCACCCGCCTTCCCCGTCCTCCGAGCTCCGCCTCACCGACGGCACATCTGTCAA
CTTCAACGGCCACTTCGCCGCCGCTTCCCCCACCTCATCTATCATCCAACAACAACTACCTTATCTCCATCTCGTCTACGTCACGGAGAGGAACGGCACT
CACAGCATCTTCTACGACGCCATTCCTCCGCCGCACAGCGGCAGATCAAGGTCGGCTCTTGAGATCGCGCCACGTGTCTCCGTTCCGCTGTTGAGCGGTC
AGGATGCCGCTTCCGTTTCTATGAAGGATAAGCCTACGGTTGTCGGAGATAAGTTGATCTACGTGTCAACTCACGAGAAAGCTGATGATCCTAGAGCGAG
TTGGACAGCTGTCTACTCAACCGAGTTGATCACCGGGTCTACTCGGAGACTCACTCCTTATGGAATCGCCGATTTTAGCCCCGCGGTGTCTCCGTCGGGG
GTTTACACGGCGGTAGCTTCTTACGGCGGCGGCGGATGGGAAGGGGAAGTGGAGGAGCTGACTACAGATATCTACGTGTTCTTGACTCGCGACGGATCTG
AACGAGTCAAGATCGTCGAACACGGTGGGTGGCCGAGTTGGGTCGACGATTCAACTCTGTTCTTCCACAGGAAGAACCAATTCGATGATTGGATCAGCGT
TTACAAGGCAAGTTTGCCTAGCAGTGGTCCGATCTCGACCGATTCGGTCGTAATTGAGCGAGTCACTCCTCCAGGGATCCACGCCTTCACTCCGGCGGCT
GCTCCGGGAAACTACGATTTCATCGCCGTCGCTACCAGACGGCCGACCTCGAGCTTTCGGCATATAGAGCTCTTCGATTTGAAAAGAAACGAATTCATCG
AGCTAACTCGGTTCGTTTCACCGACCAGTCACCACCTTAACCCGTTTATTTCACCCGATTCAGAACGAGTCGGATACCACCGATGTAGGAAAGGAGCTAA
TGGAAGTCCTCATTTGCATCTGGAGAGTCTCCGGAGCTCGAAATCCGACGTTTCTCTGTTCAGATTCGACGGTTCGTATCCGGTCTTCTCGCCGGCTGGT
GACCGGATTGCTTACGTGGACATGCCAGGGATGTACGTGGTGAACTTGGACGGTTCGAACCGGCGTAAGGTTTTTCCGGGTATGGCTTTCACAACCGAGT
GGGATCCAGTTCGACCGGGGATAGTGTACACTGCGGTGGGACCTACTTTCGCACCGATTAGCTCGGAAGTGGATATAATCTCGATCAATGTCAATTTGGT
TGACTCGGAGAACAGTGTTAGAAAGCTGACCACCAACGGGATCAACAATGCATTCCCGTCGGTCTCACCCGACGGGAAATGGGTCGTGTTCCGGTCGGGT
CAATCGGGTTACAAGAACCTGTACATAATGGATGCCGAAAAGGGCGAGTCCAACGGACTCTACCAGTTAACCGATGGTCCATGGACCGACACAATGTGCA
AATGGTCACCCGACGGCGACCTCATTGCCTTCTCATCAGACCGACACGACCCAGGAAGTGGGAGCTTCGCGATTTACCTGATCCACCCGAACGGAACCGG
TTTGAGAAAACTCGTCCAGAGCGGGCCGGGCGGGCGGTGCAACCACCCGTATTTCAGCCCGGATGGGAAAGCTATAGTCTTTACAACGGACTACGCAGGA
ATATCAGCCGAGCCAATCTCAAACCCACATCACTATCAGCCATATGGAGATATCTTCACAATCAACTTGGACGGCTCGGATTTAACAAGATTAACACACA
ACTCGTACGAAGACGGCACGCCTGCGTGGGGACCCGTGTATATCGAGCCGAAAGACGTGACGTGGCCGAATTATGGATCAGCTTGTTCGTTTGAAGATTG
CTACTTTCTGGATGAAATCCCAAGTTCTGGTGGATTCATAAATACTACATTATCTGGAAGGCCTCAGTGCTGA
AA sequence
>Lus10028545 pacid=23164643 polypeptide=Lus10028545 locus=Lus10028545.g ID=Lus10028545.BGIv1.0 annot-version=v1.0
MEINLQILCFFLFNLFLTIQSSPTSIIVTTLGRSSYAFDLFTLPTSHRSHPPSPSSELRLTDGTSVNFNGHFAAASPTSSIIQQQLPYLHLVYVTERNGT
HSIFYDAIPPPHSGRSRSALEIAPRVSVPLLSGQDAASVSMKDKPTVVGDKLIYVSTHEKADDPRASWTAVYSTELITGSTRRLTPYGIADFSPAVSPSG
VYTAVASYGGGGWEGEVEELTTDIYVFLTRDGSERVKIVEHGGWPSWVDDSTLFFHRKNQFDDWISVYKASLPSSGPISTDSVVIERVTPPGIHAFTPAA
APGNYDFIAVATRRPTSSFRHIELFDLKRNEFIELTRFVSPTSHHLNPFISPDSERVGYHRCRKGANGSPHLHLESLRSSKSDVSLFRFDGSYPVFSPAG
DRIAYVDMPGMYVVNLDGSNRRKVFPGMAFTTEWDPVRPGIVYTAVGPTFAPISSEVDIISINVNLVDSENSVRKLTTNGINNAFPSVSPDGKWVVFRSG
QSGYKNLYIMDAEKGESNGLYQLTDGPWTDTMCKWSPDGDLIAFSSDRHDPGSGSFAIYLIHPNGTGLRKLVQSGPGGRCNHPYFSPDGKAIVFTTDYAG
ISAEPISNPHHYQPYGDIFTINLDGSDLTRLTHNSYEDGTPAWGPVYIEPKDVTWPNYGSACSFEDCYFLDEIPSSGGFINTTLSGRPQC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G21680 DPP6 N-terminal domain-like pr... Lus10028545
[exp]
0 1
AT4G39090 EMB3005, RD19A,... RESPONSIVE TO DEHYDRATION 19A,... Lus10002103
[exp]
1.7 0.8892
AT5G61820 unknown protein Lus10042158
[exp]
5.2 0.8257
AT5G02380 MT2B metallothionein 2B (.1) Lus10016546
[exp]
7.5 0.8507
AT3G61180 RING/U-box superfamily protein... Lus10041359
[exp]
12.2 0.8515
AT3G01750 Ankyrin repeat family protein ... Lus10036974
[exp]
12.2 0.8554
AT5G05200 Protein kinase superfamily pro... Lus10030509
[exp]
14.7 0.8475
AT2G46100 Nuclear transport factor 2 (NT... Lus10007918
[exp]
14.8 0.8672
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Lus10019364
[exp]
14.9 0.8358
AT4G33940 RING/U-box superfamily protein... Lus10012062
[exp]
15.6 0.8438
AT4G39090 EMB3005, RD19A,... RESPONSIVE TO DEHYDRATION 19A,... Lus10024303
[exp]
17.3 0.8431

Lus10028545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.