Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58140 660 / 0 phenylalanyl-tRNA synthetase class IIc family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018853 [exp] 844 / 0 AT3G58140 672 / 0.0 phenylalanyl-tRNA synthetase class IIc family protein (.1) Lus10018854 [exp] 81 / 4e-16 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105200 [exp] 708 / 0 AT3G58140 680 / 0.0 phenylalanyl-tRNA synthetase class IIc family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF01409 [flax] [poplar] tRNA-synt_2d tRNA synthetases class II core domain (F) CL0040 [flax] [poplar] PF03147 [flax] [poplar] FDX-ACB Ferredoxin-fold anticodon binding domain
Representative CDS sequence Show only first row Show all	>Lus10028547 pacid=23164530 polypeptide=Lus10028547 locus=Lus10028547.g ID=Lus10028547.BGIv1.0 annot-version=v1.0 ATGGCGTTTTCAATCGCGCAACTCAATTTCTTCTCCAGAGCAGGAGCAGCAGCATCAGCTTCAACTTCCTCCTCCTTTCTACCTCGAACAAATGGACGCT TCAATCGCTTCATCTTCTCCATGCCTTTCTCCGGTGCTGCTGCTGTCTCCACCGGGAAAACGAGTTGGAGAGCTCCTGCCTCGTCCTCGACTCTGGAGCT CGGTGGGGTCAAGATTTCTAGAGATGATGTGGTGAGGGATGATGATCCTACCAACAATGTGCCGGATTCGATCTTCTCGAAGCTCGGTATGCAGCTCCAC AAGAGGAACAAGCACCCGCTGGGAATTCTGAAGAATGCGATTTATGAGTACTTCGACGCGAATTACTCAAACAAGTTTGATAAGTTTGATGACCTATGCC CTCTCGTGACTGTTAAGCAGAATTTCGATGATGTTCTGGTTCCTGCTGATCATGTATCCAGGAGGTATAATGATACGTATTATGTTGATTCGCAAACTGT GCTGAGGTGTCACACCAGTGCGCATCAAGCTGAGCTGTTGAGGAATGGGCACACGCATTTCCTTGTGACTGGAGATGTTTACCGTAGAGATTCTATTGAT TCGACTCACTATCCTGTTTTTCATCAGATGGAAGGATTTCGTGTTTTCTCTCCCGAAGATTGGGAGGCATCAGGTTCAGACGGCACGTCTTATGCTGCTG AGGATCTGAAGAAATGCCTTGAGGGGCTAGCCGTACACTTATTTGGCGCTGTAGAGATGCGCTGGATTGATGCGTACTTCCCTTTCACGAATCCATCTTT TGAACTTGAGATCTATTTTCAGGAGAAATGGATGGAAGTTCTAGGCTGCGGGGTCACTGAACAAGTTATTTTAAGGGACAATGGGCAGCCTGGTAAAGTT GCTTGGGCATTCGGACTTGGATTGGAAAGACTGGCAATGGTTTTGTTTGATATACCTGATATCCGGCTTTTCTGGTCGAGTGATGACCGATTTAATTCTC AGTTTGTTAAAGGCCAAATGGGCATCAAATTCAAGCCATTCTCAAAGTATCCTCCATGTTATAAAGACATGAGCTTTTGGATAAACGATTCATTCACCGA AAACAATTTATGTGAAGTTGTCAGAGGAGTGGCTGGGGATCTTGCTGAGGAGGTGCAGTTGATAGACAACTTTACCAACAAGAAGGGAATGACGAGCCAT TGCTATCGGATTGCATACCGATCCATGGAACGCTCACTTACAGACGATGAGATCAACAAGTTACAGGAGAAAGTAAGGGAAGTAGCTGAATCCAAGCTAA AAGTTGTTCTGAGATGA
AA sequence Show only first row Show all	>Lus10028547 pacid=23164530 polypeptide=Lus10028547 locus=Lus10028547.g ID=Lus10028547.BGIv1.0 annot-version=v1.0 MAFSIAQLNFFSRAGAAASASTSSSFLPRTNGRFNRFIFSMPFSGAAAVSTGKTSWRAPASSSTLELGGVKISRDDVVRDDDPTNNVPDSIFSKLGMQLH KRNKHPLGILKNAIYEYFDANYSNKFDKFDDLCPLVTVKQNFDDVLVPADHVSRRYNDTYYVDSQTVLRCHTSAHQAELLRNGHTHFLVTGDVYRRDSID STHYPVFHQMEGFRVFSPEDWEASGSDGTSYAAEDLKKCLEGLAVHLFGAVEMRWIDAYFPFTNPSFELEIYFQEKWMEVLGCGVTEQVILRDNGQPGKV AWAFGLGLERLAMVLFDIPDIRLFWSSDDRFNSQFVKGQMGIKFKPFSKYPPCYKDMSFWINDSFTENNLCEVVRGVAGDLAEEVQLIDNFTNKKGMTSH CYRIAYRSMERSLTDDEINKLQEKVREVAESKLKVVLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	0	1
AT3G04950			unknown protein		Lus10000934 [exp]	2.8	0.7696
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Lus10024288 [exp]	4.4	0.7996
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	6.0	0.7451
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10015915 [exp]	6.9	0.7656
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10012549 [exp]	9.2	0.6599
AT1G32260			unknown protein		Lus10035377 [exp]	9.7	0.6225
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	10.1	0.7173
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043146 [exp]	13.2	0.7157
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10028314 [exp]	14.1	0.6708
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10042477 [exp]	15.8	0.6475

Compare expression of checked genes

Lus10028547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.