Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21660 239 / 4e-71 Chaperone DnaJ-domain superfamily protein (.1) AT4G12780 198 / 8e-54 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 196 / 5e-53 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36520 164 / 2e-42 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 160 / 7e-41 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G75100 116 / 6e-27 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 93 / 6e-20 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018854 [exp] 619 / 0 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10012302 [exp] 221 / 5e-61 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016079 [exp] 216 / 3e-60 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012303 [exp] 214 / 2e-59 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016078 [exp] 215 / 6e-59 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10041769 [exp] 161 / 4e-41 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10033205 [exp] 135 / 7e-33 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10010642 [exp] 134 / 3e-32 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 130 / 3e-31 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G079200 [exp] 332 / 1e-106 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 316 / 2e-100 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G197600 [exp] 214 / 5e-59 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G217200 [exp] 212 / 1e-58 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G120700 [exp] 170 / 4e-44 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 168 / 1e-43 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 155 / 4e-39 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 145 / 5e-36 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 130 / 2e-31 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 124 / 1e-29 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028548 pacid=23164607 polypeptide=Lus10028548 locus=Lus10028548.g ID=Lus10028548.BGIv1.0 annot-version=v1.0 ATGGACGAGTTTGGTGTTCTGACGGAGCGATTTGGGCTGAAGCCGCAAGGGAAATCGGCTCCGATGGCCTCATCGAAACGCCCCAACTCAGCAACCGCTG CTCCGACCCGGACCCGAACCGACTCGGCTTCCAACCACCGACACCACCAACCCTCCACGCATGCGTATGGTGGTGCCAATTCGTTTGGTAATGGGTCGTT TGTCGGCGGCGGCAGCACGAAAGCTCATAGCTTTGGACGTTCTTCGGCTGATGGGTTCGACATCTTTGATGGGTTTGACAAGAGTTCGAAGCAGGGTAGC AGCAATGGCGGCGGGTCTTCTTTCGATTTGGATTCAATATTTTCAGGGACGAATCGTTCAAATGGTGGTGGATCGTCGTTTGGCAATGACGATATATTTG GCGGTATTGGTGGGTTGGGGAGCTTGAATTCTGCTAGCAATGATGACATTTTTGGGTCGTTTGGCTCTAAGCCGAAGCAGGGTGGTTCGGTGGATGACTT GTTGGGGAATTTCGGTTCGAATTCTGGTGGTGCTTCTTCTGTTAATAGGAATGGATCGTCTGGATTTGATGATGACTTGGTGCCTGGGTTTAGTTCAAGC TCGACATCGCATAAAGGAAGTTCTACACCGGGTTTCACCTCAGTAGACGACCCTTTCGTAGTCTTGGAATCAACTTCAACAGCTACAAATTCCTCATTTG TGGATCCACTTGAAGAGCTGACTAAATTCAGTCGTTCAGGAGGCGGAAGTACAAGGCCTGCAAATGGTTCATCGAAATTCTCATCATCGTTGAAGCCCCC TCCGAAACCCGGGCAGGTTCTGAAGTCGGTGAAAGTAAAAAGCTCTCATACATCCTCAATTGACGGACTTGAGGAATTCGCCACCAATAGAGTGCGAGCT ACTCCTAACAGGCAGTCAGAAGTCGATCATTCCAACCAAGGCAAAGAAAGAGAAAACGGGAAGAAGACGCCGCAGAAGAATGTTGATGATCTCGATTCCT TTTTCGGAATGGGTGCAAGATCAAGCAGTGTACCGAAGTCGAGGAGCTCATCTTCGGATCCTCTATTTGACGTTACTGCGAATAGCAGAGGTAAACCTCA AGTGTCCAGTGTAAAGGCTTCTGTGGCTTCATCTAGTATGAGGAAGGCTTCGTCTGCTGCAAATATGTTTGACGACTTTTCTTCTCTTTTCGGAGATGCG GCTCTCTCTGGGGAATTCGAAGAAGTTGAAGGAGAAACAGAAGAAAGACGAAGAGCGAGGTTGGAACGCCACCAGAGGACCAAACACAGAGTCGCACAAG CAGTTGCTGACATGAACCAACGTGACTATCAAACTCAACGTGAACAAGAAGAGAGACGTATGATCGCTGAGAAAATGGATCTCGACATAAAACGGTGGGC TGCTGGGAAAGAAGGCAACATGCGCGCTCTCCTATCATCTTTGCAATACGTGCTCTGGACTGAATGTGGTTGGGACCCCGTCTCTCTGACCGATCTCATT ACATCTTCCTCAGTGAAGAAAGTATACCGAAAAGCAACTTTATGCGTGCATCCGGATAAGGTCCAGCAGAAAGGTGCTACACTCGAACAGAAATACATCG CCGAGAAGGTCTTTGATATCCTCAAGGGTATCGAGGATGTATATCGTGCTCGTGTGCCACGCGACCTAACTAAAGGAGGCACAGGGTTCAAACATTTGAC ATTGTTCTTTTGTGAATTTGAGTTCCGTTGTCCAATTTTTGCTTATTCGGTTGTACTAATGGAAATGTGGGATCCCGGCTTGTGTAACATTGCTCTATGG TGCGGTCTTTCTTTCATTGCTAATGAAGTTGAGCCTGAAATTGTATCAATAAGGATTGAAATCGAGGTTGAGGATAAAAGAGATGGTGCTACGACGTAG
AA sequence Show only first row Show all	>Lus10028548 pacid=23164607 polypeptide=Lus10028548 locus=Lus10028548.g ID=Lus10028548.BGIv1.0 annot-version=v1.0 MDEFGVLTERFGLKPQGKSAPMASSKRPNSATAAPTRTRTDSASNHRHHQPSTHAYGGANSFGNGSFVGGGSTKAHSFGRSSADGFDIFDGFDKSSKQGS SNGGGSSFDLDSIFSGTNRSNGGGSSFGNDDIFGGIGGLGSLNSASNDDIFGSFGSKPKQGGSVDDLLGNFGSNSGGASSVNRNGSSGFDDDLVPGFSSS STSHKGSSTPGFTSVDDPFVVLESTSTATNSSFVDPLEELTKFSRSGGGSTRPANGSSKFSSSLKPPPKPGQVLKSVKVKSSHTSSIDGLEEFATNRVRA TPNRQSEVDHSNQGKERENGKKTPQKNVDDLDSFFGMGARSSSVPKSRSSSSDPLFDVTANSRGKPQVSSVKASVASSSMRKASSAANMFDDFSSLFGDA ALSGEFEEVEGETEERRRARLERHQRTKHRVAQAVADMNQRDYQTQREQEERRMIAEKMDLDIKRWAAGKEGNMRALLSSLQYVLWTECGWDPVSLTDLI TSSSVKKVYRKATLCVHPDKVQQKGATLEQKYIAEKVFDILKGIEDVYRARVPRDLTKGGTGFKHLTLFFCEFEFRCPIFAYSVVLMEMWDPGLCNIALW CGLSFIANEVEPEIVSIRIEIEVEDKRDGATT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10028548 [exp]	0	1
AT4G38040			Exostosin family protein (.1)		Lus10002664 [exp]	1.7	0.8915
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	3.5	0.8845
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	4.9	0.8771
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	5.5	0.8833
AT2G26680			unknown protein		Lus10043275 [exp]	7.3	0.8753
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	9.2	0.8762
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	10.2	0.8388
AT1G31780			unknown protein		Lus10037280 [exp]	10.6	0.8510
AT3G49720			unknown protein		Lus10039648 [exp]	13.0	0.8367
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	14.1	0.8360

Compare expression of checked genes

Lus10028548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.