Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 422 / 1e-144 Protein kinase superfamily protein (.1) AT2G48010 303 / 2e-98 RKF3 receptor-like kinase in in flowers 3 (.1) AT4G01330 232 / 2e-72 Protein kinase superfamily protein (.1.2) AT1G01540 229 / 2e-71 Protein kinase superfamily protein (.1.2) AT4G34500 225 / 4e-70 Protein kinase superfamily protein (.1) AT1G29720 232 / 1e-68 Leucine-rich repeat transmembrane protein kinase (.1) AT1G09440 222 / 2e-68 Protein kinase superfamily protein (.1) AT1G16670 219 / 2e-68 Protein kinase superfamily protein (.1) AT3G09010 219 / 4e-68 Protein kinase superfamily protein (.1) AT1G56720 220 / 1e-67 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018855 [exp] 638 / 0 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10029711 [exp] 533 / 0 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10028551 [exp] 388 / 2e-131 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10018860 [exp] 374 / 7e-129 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10001295 [exp] 378 / 8e-127 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10029714 [exp] 373 / 5e-126 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10028552 [exp] 373 / 2e-125 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10012701 [exp] 374 / 4e-125 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10018861 [exp] 369 / 1e-123 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 532 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 431 / 2e-147 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 430 / 3e-147 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 417 / 4e-142 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 323 / 5e-110 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 300 / 3e-96 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 297 / 2e-95 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 279 / 7e-89 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 273 / 1e-87 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.001G204000 [exp] 239 / 3e-76 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028549 pacid=23164594 polypeptide=Lus10028549 locus=Lus10028549.g ID=Lus10028549.BGIv1.0 annot-version=v1.0 ATGCCGAATTCCGGTGCGAGATGGTTCCAAGGATCCGAGCTCGAGAAGGCAACAAACGGATTCAACCAGAAGAATTTCTTAGGAAAAGGAGCTTATGGAG TTGTATACAAAGGTGTTCTTCCTGATGGAAGCTATGTAGCAGTGAAGGAGCTTCACGATCAGGATAATTTACCAGACGAGGAGTTCTTCAACGAGGTCGA GATTATAAGCAAGATTCGACACAGGAATCTTCTCTCGTTGAGAGGATGCTGCGCCACTAGCGATGTTTCGAGAGGTAAGAGGAGGTTTCTGGTTTACGAC TACATGTCGAATGGAAGTCTCGGCGATCATTTAGCTAATGAACATACTAGGAACCAGCTGACATGGCCGCACAGGAAGAACATTGTCCTCGATATCGCGA AGGGACTCGCGTATTTACACCACGGGATCAAGCCAGCGATTTATCATCGTGACATCAAGGCGAATAATATATTGTTGGATAACGAAATGAAGGCGAAAGT GGCTGATTTCGGACTGGCTAAGCAGAGTACGGAAGGGCAGTCTCATCTTACGACAAGAGTTGCGGGGACTCACGGGTATTTAGCGCCCGAGTACGCATTG TACGGGCAGTTAACAGAGAAGAGCGATGTTTATAGTTTCGGGATAGTGGTGCTGGAGGTGATGAGCGGGAGGAAAGTTATTGATACGACATCGAGCTCGT CGTATCTTTTGATAACGGACTGGGCGTGGATGCTGGTGAAGTCGGGGAGGATGGAGGATGTTTTCGACGAGGCAATTAGGGACCAGGGTCCGGCCGGGGT GATGGAGAGGTTTGTACTTGTGGGGATGCTTTGTGCTCATGTGTTGGTAGCGTTTAGGCCTACGATTGCTGATGCTTTAAAGATGCTGGAGGGGGATATT GATATCCCTAAGTTGCCTGATCGGCCGATGCCGTTGAGTCACGAGTCGTTTCGGCATGTTGTGTCTAAGGTTTCGAATAATGGCTCGTCGGTGAGCGAGA GGTCGATTACCAACAGTTCGAGTACGAGCTCGATGGCTTGA
AA sequence Show only first row Show all	>Lus10028549 pacid=23164594 polypeptide=Lus10028549 locus=Lus10028549.g ID=Lus10028549.BGIv1.0 annot-version=v1.0 MPNSGARWFQGSELEKATNGFNQKNFLGKGAYGVVYKGVLPDGSYVAVKELHDQDNLPDEEFFNEVEIISKIRHRNLLSLRGCCATSDVSRGKRRFLVYD YMSNGSLGDHLANEHTRNQLTWPHRKNIVLDIAKGLAYLHHGIKPAIYHRDIKANNILLDNEMKAKVADFGLAKQSTEGQSHLTTRVAGTHGYLAPEYAL YGQLTEKSDVYSFGIVVLEVMSGRKVIDTTSSSSYLLITDWAWMLVKSGRMEDVFDEAIRDQGPAGVMERFVLVGMLCAHVLVAFRPTIADALKMLEGDI DIPKLPDRPMPLSHESFRHVVSKVSNNGSSVSERSITNSSSTSSMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	1.7	0.9632
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	3.5	0.9453
AT1G80180			unknown protein		Lus10030064 [exp]	4.2	0.9334
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	5.9	0.9322
AT3G09032			unknown protein		Lus10035520 [exp]	6.6	0.9120
AT4G25030			unknown protein		Lus10036513 [exp]	6.9	0.9282
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	7.1	0.9360
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	7.7	0.9494
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	18.1	0.9121
AT3G48990			AMP-dependent synthetase and l...		Lus10039232 [exp]	18.4	0.8892

Compare expression of checked genes

Lus10028549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.