Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00390 110 / 3e-27 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 96 / 1e-22 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 97 / 3e-22 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 86 / 2e-18 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 84 / 6e-18 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 82 / 2e-17 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 80 / 2e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT5G28040 80 / 2e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G44810 76 / 2e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT3G04930 76 / 3e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018859 [exp] 434 / 5e-154 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 207 / 4e-64 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 204 / 7e-64 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 194 / 2e-58 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10017793 [exp] 122 / 9e-33 AT1G66420 72 / 6e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 89 / 2e-19 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 89 / 2e-19 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 89 / 2e-19 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 82 / 1e-17 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293900 [exp] 186 / 2e-55 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 179 / 1e-52 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 90 / 9e-20 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 90 / 2e-19 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 84 / 7e-18 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 63 / 8e-11 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 62 / 2e-10 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10028550 pacid=23164557 polypeptide=Lus10028550 locus=Lus10028550.g ID=Lus10028550.BGIv1.0 annot-version=v1.0 ATGGCTCCCAAGCCCGCGAAGGAAGACCCACCAGCCGCTTCTTACTCCGAAGAAGAAGCCTCCAGCGACGAGGAGGAGACTGAGACTTCCGGTGGGGAAC CACAGTCTACTCAGAAGAAGCCAGCTCTCCAGAAGCCGGAGGAATCGTTCTCTGCACTAAGGTCGGAGTCGGAGGAAGAGGTATCAGAATCGGAATCGGA ACCCGAGGACGGTTCAGACACCGACTCCGACTTGAAGACCGTCGCCGCGGTTGGTCAGAATGTCAAGCCTACCGCTTCAAAACCGATGGAAGATTCTCAG GCGAAGTCATCCAAGCCGAAGGCTAAACCCGCGCCGGCTACTCCTGTGTCCAAGCTGACGGCGGCAACGACGGGGAAGAGAGCCGCCGCCGGTGGTGAGA CTGAGGAGTCGAAGGACGTGAAGCGGCGAAAGGAAGAGAACACTGAGGATACGAAGAAGCAGCTGTTTCAACGGCTTTGGAATGATGATGATGAGATTGC TTTGTTGAGTGGGATGATTGAGTTTACGGAGAAGAAAAGGGTTGATCCGACGAGGGACTTGGCTGGATTTCACGACTTCATCAAGAAGTCTCTGAGTGTT GAGGTGTCGCAGAGTCAGCTGAAGGAAAAGATTGGGAGGCTGAGGAGGAAGTTTGCCAAAGCTAATGAAGGAGAAGATAAGAGCTTTTCGAAAGCTCATG ATCGGGAGGTCTTCGACTTGTCAAAGAAGATTTGGGGGACGAGCAAGAAGCAAGCTGAACCTTCGAATAGGAAGGCAAAGGTGGTCAACAATGGTGATAG CAGCAAGTTAGCTGCTATTAAGGCGGATTTGGGAATAGGGAATGGTAAAGAAGACAAGATGGAGATTGAAAAGCACGAGCCTTTGAAGGGCAATTTTAAC ATGGATTGGTTCGAGGATATGGGGAAATTTGTGGTGACGAAGGGGCTGGATTATGTGGAAGGATCGAAGCGTGGTGAGCTGGAGAAGAGGTGGAAGGAGG TGAAGGTTGCAAGTTTGAACCTTTTGGTTAAGCAGTCTCAGTTGATGATCGACCAAGCTAAGTTGATGTTGGATGCTATGGAGGACTGA
AA sequence Show only first row Show all	>Lus10028550 pacid=23164557 polypeptide=Lus10028550 locus=Lus10028550.g ID=Lus10028550.BGIv1.0 annot-version=v1.0 MAPKPAKEDPPAASYSEEEASSDEEETETSGGEPQSTQKKPALQKPEESFSALRSESEEEVSESESEPEDGSDTDSDLKTVAAVGQNVKPTASKPMEDSQ AKSSKPKAKPAPATPVSKLTAATTGKRAAAGGETEESKDVKRRKEENTEDTKKQLFQRLWNDDDEIALLSGMIEFTEKKRVDPTRDLAGFHDFIKKSLSV EVSQSQLKEKIGRLRRKFAKANEGEDKSFSKAHDREVFDLSKKIWGTSKKQAEPSNRKAKVVNNGDSSKLAAIKADLGIGNGKEDKMEIEKHEPLKGNFN MDWFEDMGKFVVTKGLDYVEGSKRGELEKRWKEVKVASLNLLVKQSQLMIDQAKLMLDAMED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10028550 [exp]	0	1
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10018605 [exp]	2.2	0.9108
					Lus10007581 [exp]	4.2	0.8767
AT5G17630			Nucleotide/sugar transporter f...		Lus10019209 [exp]	4.5	0.8892
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10018859 [exp]	5.2	0.8718
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	5.3	0.8757
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	5.7	0.8968
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	6.8	0.9028
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10041902 [exp]	11.8	0.8714
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	12.8	0.8631
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	13.4	0.8542

Compare expression of checked genes

Lus10028550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.