Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 421 / 3e-140 Protein kinase superfamily protein (.1) AT2G48010 311 / 8e-98 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G70520 240 / 2e-70 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G01540 234 / 6e-70 Protein kinase superfamily protein (.1.2) AT3G58690 230 / 2e-69 Protein kinase superfamily protein (.1) AT4G02630 233 / 3e-69 Protein kinase superfamily protein (.1) AT1G16670 228 / 8e-69 Protein kinase superfamily protein (.1) AT3G24540 230 / 4e-68 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT4G01330 228 / 2e-67 Protein kinase superfamily protein (.1.2) AT1G29730 235 / 6e-67 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028552 [exp] 761 / 0 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10018861 [exp] 724 / 0 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10018860 [exp] 605 / 0 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10029714 [exp] 498 / 1e-170 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10029711 [exp] 466 / 5e-157 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 409 / 4e-139 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10018855 [exp] 411 / 1e-138 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10001295 [exp] 410 / 2e-135 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10028554 [exp] 323 / 9e-108 AT1G11050 236 / 2e-74 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 531 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 451 / 5e-151 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 450 / 7e-151 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 449 / 1e-150 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 283 / 3e-86 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.017G132250 [exp] 269 / 2e-85 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 266 / 3e-83 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.005G040200 [exp] 269 / 8e-82 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 263 / 5e-79 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 257 / 4e-78 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028551 pacid=23164586 polypeptide=Lus10028551 locus=Lus10028551.g ID=Lus10028551.BGIv1.0 annot-version=v1.0 ATGGTTAAGGTCAGCTTCATCTCCTCCACCTTGCTTCTGCTTCTTTTCTGGACAAGCTTTGTTTCTTCGATTCACGCAGTTTCGTCTATGCTTCAGTGTC CTGTGAATTTCACCTACTTGGAGAACTACCGGACCGAGTTATTGCCCTGCCAAGAGGATCCGTATTCTGCACATTGCTGCTTGTATCTTTTGCAACTCCT GTCAATCGGATTTTCTCAGTATCTGAGAGAATCGTCGATGTTCTTCTTGCCCAATGCAAGCTACATGCCTATCTGTGTGTCCTCTCTGAAACAGAAGCTT AATGCTTCTTCTTCTGCTGATGCCGCGTCAGCTGTCTCCTTATGTTTCAAGGAGATGACAGTGTTTGTTGCCAGCAACTCCGGGTGCTACGGAATCGTCT CCTTACAGGACTGGAAGAAAAAAGTCGGTCCAACCCCGTCGCTGGACACTTCTTGTAAGGGAGATTTGAGCTTCCCGGCTTGTAGTGAGTGCTTTGACGA GGTAAACAAAGTGGTAGATCCTCTGAGGTCTGGTTCGAGTAAAATCGGAGACATCAACAGCTGCTACATCTTGACTGTCATGTATGCAGCCGGAATTGCC AACGAGTATGGCCCCTTAGATCGCAGAACCAGTTCTTGCATGATGCAGTCCGAAAGGGATGACGAACTTGATCAGCAGCCATCAAAAGGTTTGAGCAAAG CCAGAGTGTTGCAATTTGTGTTTGGGTTAATAGGAGGTGTTCTGGTGATCGGTGTTCTTGTTCTTCTGTACAGGAAGAAGTTGCATTCTCGCAGACCGGG AAAGGGCATGGATCCAGACCCTGCGGGAAGTTCGAATCCAAGTAGTATGATGTTGGCCAAAATGGGTTTGCGTTGGTTTCGTCTCCAAGAGCTGGAGCGA GCCACTGGTGGGTTTTCTAACAAGAACTTGGTTGGAACAGGGACATTTGGGGTTGTGTATAGAGGAAAGCTCGAAGAGGACGGTTCTTTAGTTGCTGTGA AGGAGCTTCTCGAAGTCGAATCCTTTGGGAACGAGAAGGAGTTTGTGAACGAAGTCGAGATCGTGAGTAAGATCAAACATAGGAATCTCCTTTCCCTCAG AGGCTGCTGTGTTGATGTGGAGGGGAAGAGGAGGTTTCTAGTCTATGATTTCATGGCGAATGGCAGTGTTGCGGACCATTTATCGAATGTGAATCGAAGA ATACAGTTATGCTGGGAGCTAAGGAAGAATATAATCATTGATGTCGCAAAAGGGATTGTTTACTTGCATTGCGGTGTGAAGCCTGCTATATATCATCGGG ATATAAAAGCGAGCAACATACTTCTGGATTCGGACATGCGAGCGAAAGTTGCCGACTTTGGCTTAGCCAGACAAGGGAAAGAAGACGGATTCTCCCACAT CACCACGAGAGTGGCCGGGACATGTGGATTTTTAGCACCCGAGTACGCAATGTACGGTCACTTAACTCATAAGAGCGACGTCTACAGCTTCGGAGTCTTG ATTCTCGAAATCGTATCTGCAAAGAGAGTCATAGACACCTCCTCGAGCAACTCGTCTGCTGTTCTGATAACGGACTTGGTGTGGAATCTGGTGAAGGCGG GCAGAGTGGAGGATATTTTCGACGGGACCATGAAGGACGATGAGAAGTATCACGGAGAGACGATGACAAGGTTTGTTATGGTTGGGATTCTATGTGCGCA CGTAATTGCTGCTCGTCGGCCGACCATTACTGAAGCTCTTAGGATGCTGGAAGGCGAAGTTGAAGTCCCCGAAATACCTGACCGGCCACTGGCGTTGTCT CGCGAGCGGCTGGCTTTAGATGTAATAGACCATGTTTTAGAGGATTGA
AA sequence Show only first row Show all	>Lus10028551 pacid=23164586 polypeptide=Lus10028551 locus=Lus10028551.g ID=Lus10028551.BGIv1.0 annot-version=v1.0 MVKVSFISSTLLLLLFWTSFVSSIHAVSSMLQCPVNFTYLENYRTELLPCQEDPYSAHCCLYLLQLLSIGFSQYLRESSMFFLPNASYMPICVSSLKQKL NASSSADAASAVSLCFKEMTVFVASNSGCYGIVSLQDWKKKVGPTPSLDTSCKGDLSFPACSECFDEVNKVVDPLRSGSSKIGDINSCYILTVMYAAGIA NEYGPLDRRTSSCMMQSERDDELDQQPSKGLSKARVLQFVFGLIGGVLVIGVLVLLYRKKLHSRRPGKGMDPDPAGSSNPSSMMLAKMGLRWFRLQELER ATGGFSNKNLVGTGTFGVVYRGKLEEDGSLVAVKELLEVESFGNEKEFVNEVEIVSKIKHRNLLSLRGCCVDVEGKRRFLVYDFMANGSVADHLSNVNRR IQLCWELRKNIIIDVAKGIVYLHCGVKPAIYHRDIKASNILLDSDMRAKVADFGLARQGKEDGFSHITTRVAGTCGFLAPEYAMYGHLTHKSDVYSFGVL ILEIVSAKRVIDTSSSNSSAVLITDLVWNLVKAGRVEDIFDGTMKDDEKYHGETMTRFVMVGILCAHVIAARRPTITEALRMLEGEVEVPEIPDRPLALS RERLALDVIDHVLED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10028551 [exp]	0	1
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10036823 [exp]	6.9	0.9265
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002302 [exp]	7.1	0.9256
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	14.4	0.9240
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10029045 [exp]	15.5	0.9089
					Lus10042766 [exp]	18.3	0.8881
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	20.4	0.9034
AT3G25160			ER lumen protein retaining rec...		Lus10022763 [exp]	20.8	0.8899
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	22.5	0.9096
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	24.8	0.9044
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	25.5	0.9109

Compare expression of checked genes

Lus10028551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.