Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 452 / 2e-152 Protein kinase superfamily protein (.1) AT2G48010 292 / 2e-90 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G01540 229 / 2e-68 Protein kinase superfamily protein (.1.2) AT1G07650 239 / 4e-68 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G34210 229 / 1e-66 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G09440 224 / 2e-66 Protein kinase superfamily protein (.1) AT4G33430 227 / 4e-66 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT4G34500 223 / 4e-66 Protein kinase superfamily protein (.1) AT1G29730 233 / 5e-66 Leucine-rich repeat transmembrane protein kinase (.1) AT3G58690 221 / 5e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018861 [exp] 1050 / 0 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10028551 [exp] 776 / 0 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10029714 [exp] 529 / 0 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 513 / 3e-179 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10029711 [exp] 482 / 2e-163 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001295 [exp] 414 / 4e-137 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 406 / 8e-137 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10012701 [exp] 410 / 2e-135 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10028549 [exp] 398 / 6e-135 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 526 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 466 / 5e-157 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 466 / 5e-157 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 462 / 7e-156 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.005G040200 [exp] 283 / 5e-87 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 280 / 4e-85 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 279 / 9e-85 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.017G132250 [exp] 264 / 2e-83 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 249 / 7e-77 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.013G028000 [exp] 253 / 2e-76 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028552 pacid=23164446 polypeptide=Lus10028552 locus=Lus10028552.g ID=Lus10028552.BGIv1.0 annot-version=v1.0 ATGAACTTCATCAGCTCAGCAATTGTTCTTCAGATCAGCCTTCTTCTTCTGTACTGCAGTTTCACTGCAGTTTCTTCTTCCACGTCATGTCCAGTGAATT TCACCTACATAGAGAACTACCAGACCCAGCTATCACCATGCCAGCAGGACCCGTTTTCGTTACGTTGCTGCTGGTTTCTTCGACCTGTCGTCAGGATAGG ATTCGCTCAGTACCTGAAAGAATCTTCGATGTTCTTCTTGCCTAACGAAAGCTACATACCTTCTTGCTTATCCAGTTTGAAGCAGAAGCTCAATGCTTCT GCTGGTGTGGACCAGTCTTCTGTCTCATTATGCTTGAAGGACCTGTTGATTTTCGTTGCTGGTGGTTTGTCCGGGTGTGATGGAATCGTCACCTTGCAGG ATTGGAAGAGAAAGGTTGGTCCAACTCCATCTTTGGACAGTTCCTGCTTGGGTGATTTGAACAGCCCAGCAACGTGTGCTGCCTGCACTACGGCAGGAAG TAGAGTGGTAGCTAGTCAAATGTCGTCTGAGTCGAGCCAAGATCGAGACGGTAGTACTAGCTGCTCGGTCTTGGCTATCATGTACGCTGCCGGAATTGCC AACCAGTATGGCCCCTTGGATAACAGGACTTCTTCTTGCTTGCTGTTCGCTCTTAGGGACGGCCTAGAACCCGACCAAAACCCACCAAAATATTCGAGCA AACGAAGAGTGCTCGAGTTGGCATTCGGGATAACTGGAGGGGTGCTTCTTGTGGTGAGTGTTGTTTTTATTCTTCTGTACAGGAAGAAGTTGAATTGCTG GCAAGATAAGATCTTGGATTCAGAACACGCGAGCAGTTCGAATCCAAATGACTTGATGTTGGCCAAGATGGGGTTACAATGGTTTCGTCTCCACGAGCTG GAGGGAGCCACGGATGGATTCTCTCAGAAAAACCTGGTCGGTAAAGGGACGTTCGGTGTCGTATACAAGGGGAAGCTCGAGGAAGATGGCTCTATAGTTG CAGTCAAGGAGCTTCTCGAAGTCGAATGTTTCGGAAATGACAAGGAGTTCGTGAACGAAGTCGAGATCGTGAGCAAGATCAAACACAAGAATCTCCTTCC TCTGAGAGGATGCTGTGTTGACATGAAAGTGAAAAGGAGATTTCTTGTTTACGAATTCATGGCGAATGGGAGTGTTGCGGATCATCTATCAAACGCGACA CAAAGAGTCCGGTTGTGTTGGGAGCAAAGGAAGAACATCATTCTCGACGTGGCGAAGGGGCTAGTTTACTTGCATTGTAGTGTGAAGCCTGCCATTTACC ACCGCGACATCAAGTCGAGCAACGTACTACTGGATTTTGATTTAAGAGCTAAAGTTGCAGACTTTGGGTTAGCGAGACAAGGGAAGGAAGATGGGTACTC TCATGTCACGACCAGGGTGGCCGGGACGCACGGGTTTTTAGCACCGGAGTATGCAATGTACGGACACTTATCACACAAGAGCGATGTTTACAGCTTTGGA GTGCTGATTCTCGAGATCATGACTGCTAGGAAAGTGATTGATACCAACTGTAATGATTCTTCCTCGCCGGTTTTGATAACGGATTGGGTGTGGGATTTGG TGAAGTCGGGGAGAGTGGAGGAGGTTTTCGACGAGACTATGAAGGAAGATTATAGTGATGATGGAGAGATGGTGATGATGATGACGAGGTTTGTTATGGT GGGGGTTCATTGTGCACACATTGTTGCTGCTCATAGGCCAGACATTAGTGAAGCTCTCAGGATGCTTGAAGGTGGCATTGATGTCCCGAAAACGCCTGAA AGGCCGTTGCTGATGTCTCGGTCTAGTCGTTGGGTTTAG
AA sequence Show only first row Show all	>Lus10028552 pacid=23164446 polypeptide=Lus10028552 locus=Lus10028552.g ID=Lus10028552.BGIv1.0 annot-version=v1.0 MNFISSAIVLQISLLLLYCSFTAVSSSTSCPVNFTYIENYQTQLSPCQQDPFSLRCCWFLRPVVRIGFAQYLKESSMFFLPNESYIPSCLSSLKQKLNAS AGVDQSSVSLCLKDLLIFVAGGLSGCDGIVTLQDWKRKVGPTPSLDSSCLGDLNSPATCAACTTAGSRVVASQMSSESSQDRDGSTSCSVLAIMYAAGIA NQYGPLDNRTSSCLLFALRDGLEPDQNPPKYSSKRRVLELAFGITGGVLLVVSVVFILLYRKKLNCWQDKILDSEHASSSNPNDLMLAKMGLQWFRLHEL EGATDGFSQKNLVGKGTFGVVYKGKLEEDGSIVAVKELLEVECFGNDKEFVNEVEIVSKIKHKNLLPLRGCCVDMKVKRRFLVYEFMANGSVADHLSNAT QRVRLCWEQRKNIILDVAKGLVYLHCSVKPAIYHRDIKSSNVLLDFDLRAKVADFGLARQGKEDGYSHVTTRVAGTHGFLAPEYAMYGHLSHKSDVYSFG VLILEIMTARKVIDTNCNDSSSPVLITDWVWDLVKSGRVEEVFDETMKEDYSDDGEMVMMMTRFVMVGVHCAHIVAAHRPDISEALRMLEGGIDVPKTPE RPLLMSRSSRWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10028552 [exp]	0	1
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Lus10043140 [exp]	8.5	0.6363
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10041760 [exp]	22.8	0.6292
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	56.6	0.6203
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Lus10036494 [exp]	96.2	0.6094
AT1G11340			S-locus lectin protein kinase ...		Lus10007601 [exp]	112.0	0.6008
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	132.5	0.5662
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	198.3	0.5629

Compare expression of checked genes

Lus10028552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.