Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 235 / 4e-74 Protein kinase superfamily protein (.1) AT1G01540 179 / 7e-55 Protein kinase superfamily protein (.1.2) AT4G02630 175 / 2e-52 Protein kinase superfamily protein (.1) AT4G01330 174 / 4e-52 Protein kinase superfamily protein (.1.2) AT1G16670 169 / 5e-51 Protein kinase superfamily protein (.1) AT3G59110 172 / 7e-51 Protein kinase superfamily protein (.1) AT1G09440 171 / 9e-51 Protein kinase superfamily protein (.1) AT2G20300 174 / 3e-50 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT3G24540 170 / 3e-50 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT2G48010 171 / 5e-50 RKF3 receptor-like kinase in in flowers 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018860 [exp] 322 / 3e-110 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10028551 [exp] 323 / 4e-108 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10018861 [exp] 322 / 9e-108 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10028552 [exp] 321 / 2e-107 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10029714 [exp] 267 / 6e-87 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10028549 [exp] 257 / 2e-85 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10018855 [exp] 255 / 9e-84 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10029711 [exp] 251 / 7e-80 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001295 [exp] 233 / 1e-72 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 265 / 9e-86 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 238 / 8e-75 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 237 / 2e-74 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 235 / 9e-74 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 193 / 3e-60 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 174 / 8e-53 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.008G040800 [exp] 172 / 8e-53 AT1G16670 289 / 5e-96 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 173 / 1e-52 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 173 / 2e-52 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 174 / 7e-52 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028554 pacid=23164451 polypeptide=Lus10028554 locus=Lus10028554.g ID=Lus10028554.BGIv1.0 annot-version=v1.0 ATGGGGCTTCGGTGGTTTCGGCTCCACGAGCTGGAACGAGCTACTGACGGATTTTCGAGCAAGAACATAATTGGGAAGGGGGAATTTGGTGTTGTGTACA GGGGAAAGCTTGAAGGGGATGATGATGGTTGTTTGGTTGCTGTGAAGGAGCTGCTCGAAGTGGAATCGTTCAGGAACGAGAAGGAGTTTGCGAATGAAGT TGAGATTGTTACTAAGATCAGGCATAGGAATCTGCTTCACCTCAGAGGCTGCTGTGTTGCAGGTGGTGGTGACATCATGAGTGGGAAGAGGAAGAGGAGG TTTCTTGTGTATGATTTCATGGCTAATGGTAGTGTTGCTGACCATTTATCGGATATGTCGCGTAGAGTTCGGCTGTGTTGGGAGCAAAGGAGGAACATAG TCGTTTATGTGGCTAAAGGGCTTGTTTACTTGCATTGTGGTGTGAAGCCTGCGATTTACCACCGGGATATAAAGGCCAGCAACATCCTTCTGGATATGGA TTTGAGAGCTAAAGTTGCAGACTTTGGTCTGGCAAGGCAAGGGAAAGAAGGGTCCTTTCATATCACCACGAGGGTAGCCGGGACGCATGGCTTTCTCGCA CCAGAATATGCAAATATACGGCCACTTGACTCAGAAAAGCGACGTTTATAG
AA sequence Show only first row Show all	>Lus10028554 pacid=23164451 polypeptide=Lus10028554 locus=Lus10028554.g ID=Lus10028554.BGIv1.0 annot-version=v1.0 MGLRWFRLHELERATDGFSSKNIIGKGEFGVVYRGKLEGDDDGCLVAVKELLEVESFRNEKEFANEVEIVTKIRHRNLLHLRGCCVAGGGDIMSGKRKRR FLVYDFMANGSVADHLSDMSRRVRLCWEQRRNIVVYVAKGLVYLHCGVKPAIYHRDIKASNILLDMDLRAKVADFGLARQGKEGSFHITTRVAGTHGFLA PEYANIRPLDSEKRRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10028554 [exp]	0	1
AT1G11050			Protein kinase superfamily pro...		Lus10028553 [exp]	1.0	0.9678
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	5.5	0.9316
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	6.2	0.8976
					Lus10041686 [exp]	8.5	0.9356
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	9.6	0.9074
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Lus10014920 [exp]	10.8	0.9333
					Lus10010270 [exp]	11.5	0.9283
AT5G44390			FAD-binding Berberine family p...		Lus10038442 [exp]	11.5	0.9379
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	14.1	0.8793
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	14.7	0.9212

Compare expression of checked genes

Lus10028554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.