Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31180 606 / 0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G26870 575 / 0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 124 / 8e-31 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 122 / 2e-30 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 115 / 9e-28 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 84 / 4e-17 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT4G33760 57 / 1e-08 tRNA synthetase class II (D, K and N) family protein (.1) AT1G68420 46 / 1e-06 Class II aaRS and biotin synthetases superfamily protein (.1) AT3G13490 42 / 0.0005 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018862 [exp] 797 / 0 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 257 / 2e-85 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10032704 [exp] 115 / 1e-27 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10007470 [exp] 113 / 7e-27 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 107 / 3e-25 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 82 / 2e-16 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10025874 [exp] 78 / 3e-15 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10038228 [exp] 75 / 1e-14 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10008180 [exp] 65 / 5e-12 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085400 [exp] 637 / 0 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.007G129800 [exp] 134 / 3e-34 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 129 / 2e-32 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 110 / 5e-26 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 108 / 1e-25 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 80 / 8e-16 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.009G084300 [exp] 68 / 4e-12 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 65 / 3e-11 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.003G221600 [exp] 58 / 6e-09 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Lus10028555 pacid=23164547 polypeptide=Lus10028555 locus=Lus10028555.g ID=Lus10028555.BGIv1.0 annot-version=v1.0 ATGGTCAAGTTTGTCTCCGGTTTGAGCAGTGAGTCCATTATAGATGTTCATGGAGTGGTATCGGTGCCTGGCGAGGAAATCAAAGGAGCTACCCAGAAAG TTGAAATTCAAGTGAAGAAGCTGTTCTGCGTTAGCAGAGCAATTCCAGTTCTACCAATGAACATTGGTGATGCCTCTAAGAGTGAGAAGGAGATTGAAAA TGATGGTGGAAACCGTGTTAATCAAGACACACGTTTGAACAATCGAGTTTTGGATCTACGCACACCAGCTAACCAAGCGATATTTCAACTTTCAAGTGAA GTTGAATTCGTGTTCACGGACTTTCTGCGGTCAGAAAAATTCATTAAGTTCAACACTCCAAAGCTGACAGCAGGTAGTAGTGAAGGGGGTGCTGCTGTAT TCAGGTTGGACTACAAAGGTCAACCTGCTTGCTTGGCACAGTCACCACAACTTCACAAGCAAATGCTTATTGCTGGAGATTATGGACGAGTGTTTGCGGT TGGTCCTGTTTTCAGAGCAGAAGACTCGTACACTCACAGGCACTTGTGTGAGTTTACGGGCCTTGATGTTGAAATGGAGATAAGAAGCTACACTGAGGTA ATGGACATTGTCGACAGGCTATTTGTCAATATCTTTGACAGATTGAACGAGGAGTGTAAGCCACTCCTCGAAGCTATCAATAAGCAATATCCATTTGAGC CGTTGAAGTACTTGGAGAAGACATTGCGACTGACATTTAAAGAAGGGATTGAAATGCTCAGAGTGGCCGGAGTGGAAGTTGATCCCTATGGAGATCTGAA CACTGAAACAGAAAGAAAACTGGGCCAGCTAGTCTTGGAGCAGTATGGCACTGAGTTCTACATTCTTCACCGCTACCCGTTGGGCGTAAGGCCATTCTAC ACCATGCCGTGCCCCGATAATCCAAAATACAGCAACTCCTTCGACGTCTTCATTCGAGGTGAGGAGATTATTTCAGGTGCTCAGCGTATCCATGTGCCCG ATTTTCTTGAGCAACGTGCCAAGGAATGCGGGATAGATGTCAGCACAATCTCTAGCTACATTGATTCTTTCAGATGTGGCATGACTCCACATGGTGGGTT CGGAGTGGGGTTGGAGCGGGTCATCATGCTCTTCTGCGGCCTGAACAACATCCGCAAGACCTCGGCGTTCCCTCGTGACCCTCGTAGGCTTACACCATGA
AA sequence Show only first row Show all	>Lus10028555 pacid=23164547 polypeptide=Lus10028555 locus=Lus10028555.g ID=Lus10028555.BGIv1.0 annot-version=v1.0 MVKFVSGLSSESIIDVHGVVSVPGEEIKGATQKVEIQVKKLFCVSRAIPVLPMNIGDASKSEKEIENDGGNRVNQDTRLNNRVLDLRTPANQAIFQLSSE VEFVFTDFLRSEKFIKFNTPKLTAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMLIAGDYGRVFAVGPVFRAEDSYTHRHLCEFTGLDVEMEIRSYTEV MDIVDRLFVNIFDRLNEECKPLLEAINKQYPFEPLKYLEKTLRLTFKEGIEMLRVAGVEVDPYGDLNTETERKLGQLVLEQYGTEFYILHRYPLGVRPFY TMPCPDNPKYSNSFDVFIRGEEIISGAQRIHVPDFLEQRAKECGIDVSTISSYIDSFRCGMTPHGGFGVGLERVIMLFCGLNNIRKTSAFPRDPRRLTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	0	1
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	3.3	0.9456
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	6.0	0.9364
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	6.9	0.9254
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	7.0	0.9251
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	8.8	0.9200
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	10.4	0.9311
					Lus10017445 [exp]	10.4	0.8902
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	10.7	0.9268
AT2G36670			Eukaryotic aspartyl protease f...		Lus10027732 [exp]	11.8	0.8987
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	12.4	0.9211

Compare expression of checked genes

Lus10028555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.