Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21650 679 / 0 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT1G21651 679 / 0 zinc ion binding (.1) AT3G18860 72 / 1e-12 transducin family protein / WD-40 repeat family protein (.1.2) AT5G50120 69 / 5e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 68 / 1e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49040 63 / 7e-10 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) AT4G02730 60 / 2e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G49200 59 / 6e-09 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT1G49450 59 / 7e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018865 [exp] 1229 / 0 AT1G21650 573 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10040490 [exp] 67 / 5e-11 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10033092 [exp] 66 / 1e-10 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10014674 [exp] 63 / 3e-10 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 63 / 3e-10 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039568 [exp] 60 / 4e-09 AT3G51930 498 / 6e-176 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011296 [exp] 58 / 3e-08 AT3G18860 1089 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10023563 [exp] 57 / 4e-08 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10036881 [exp] 56 / 6e-08 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G066500 [exp] 866 / 0 AT1G21651 716 / 0.0 zinc ion binding (.1) Potri.004G150700 [exp] 71 / 2e-12 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.003G202700 [exp] 70 / 3e-12 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 68 / 1e-11 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125104 [exp] 68 / 1e-11 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G112184 [exp] 68 / 2e-11 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 65 / 4e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 66 / 6e-11 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 63 / 3e-10 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 59 / 6e-09 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028560 pacid=23164570 polypeptide=Lus10028560 locus=Lus10028560.g ID=Lus10028560.BGIv1.0 annot-version=v1.0 ATGGAGCTTCCTGAATGTCCAGTCTGCCTCCAATCCTACGACGGCGACGAAACACTTCCCCGAGTACTCCCTTGCGGCCACACAGCCTGCGAATCGTGTC TCAAGAGCTTACCTGAAAGGTACCATCTCACCGTCCGTTGCCCCGCCTGTACTCAATTAGTCAAATTCCCATCATCTTTAGGTCCCTCTTCCCTCCCCAA GAACATCGATCTACTCAGACTGATCCCCGATACTGCTAACAAAGATCGAAGTTGCTCGAAAATCGGTGCCGATCTCCTCGAAAGCAGCTTTCTTCCTCGT CTCTGGTCGGACGAGTTCTACTCCACGTGGCGGAAGTGGATTCTCCCACACGACGCCGTTTCAGTGGAGGATGGGGAGGAAAGAAGAGGACTTTTCAAGG TTGGTGATGCTGGGAAAGAAGAAAAAGGCACTGTCTTTAAGTTGAGCTATGTAGCTAAGATCATGAATTGTTTGTATGAGATGAGTGAAGAAAAGAGAAA GGACTTGGGTTCGATCCTAAAGATTGGTGAGAAAAGGAGTGGTAGGGTTTGTCAAGTTCATGGATTGTGGAGTGATCTTGATGATGGTGCTTTGTATTGT GTGTCTGAGAGGATGAATGATGTGATGAGCTTAGGTGAAATGTCTGGTTTTTCCATGATGGCGGGGATGGAGATTTGTGAAGTAGTGATGAGTCTGCATC TTGAAGGTGTAATTGCAGGTGGATTAGGGCTCGATTGTTTCGCGTTCGATGATTTCGGACATGTTAGTTTGAGTTTGAATCAGGTTCTAGCTCTTGGTGA AGCCAGTTGGAAAGATGTTTCAGGAGTTGTTGGTATTGGCAATAGAGAGTTGGGAGCCTTGGTTGGTGAGTTTCTGAGAAGAGATGAGTATTTGAGCCCC GAGGCATTGTTCGAGATCTTCGGGGGCTCGGTTTCTTCGGTTGGATATAGGTCAGATGTTTGGTCATTGGCTTTGATATTCGTTAGACTTCTTGTTGGGG AACAGTTTACTGAAGAAATGCTTGCTTGCTTGGATCGCTTCGTTTCGGAAATGAGCGAAAAGGATGGTTTAGATTTTGAAGGTCTTTATAACAGGTTGAT GGAGAAAGCAAGTCATTTACTAGAAAGCAAATGTGGAGAGGAACTTCAGTCATTGCAGAAGCTTCTATGTGAATGTTTGAACTTTCAGATAGAGAAGCGG CCGAGTGTGGTCGATGTGTGGAAGTGCATTCGAGAAATGGTCATAGGAGTCAAGTTTGATGCCGGTCCTAGATTTGATAAGCTTACAGGAATGTGCCTGG TTCTTGGAGAAATGTGTCATGTGGCGAAGGGAAAATCCGAAATGCAAAATGATGATGAATTACAGGAGGAGGAAGAAAATGTTGATGAATTTCAGGAGAC CGGTACAAATGCCATTGAGGGATTGGTGGAGGGTAAAGTGAAGTGCACAGATTTGCAAGGCCATCTCGATTGCGTCACTGGGTTCGCTGTTGGAGGTGGA TTTCTTTTCAGCTCCTCGTTTGATAAGTCAGTTTGTGTATGGTCATTACAGGATTTCTCTCATGTTCACACATTCAAAGGCCACGAGCATAAGGTGATGG CGGTAATCTACACGGAGGAATTCCAAGAACCATCATGCATAAGTGCAGATAGTGGAGGCGGCATATATCTCTGGACTATTCGCAACCCTCTCGAGCAAGA ACCATCAAAAAAATGGTACGAGCAAAAGGACTGGCGATATAGCGGTATCCATGCTTTAGCCACTGCAGGCAACGGTTATCTTTATACGGGAAGTGGAGAT AGGTTGATAAAGGCATGGTCTTTACAGGATGGAACTCTGTCGTGCACAATGGCTGGTCATAAATCGGTGGTTTCGACTTTATCAGTCTGTAACGGAGTTC TCTACAGCGGTAGCTGGGACGGGACTGTTCGATTGTGGAGTCTTAGTGATCATAGTCTTCTAACAGTGTTAGGTGAAGATATCCCGGGAGGAATCTCGAC TTCTGTCCTGTCTGTTATCGCTGATAAGAACATCATTGTTGCGACTCACGAGAATGGGAATTTGAAGGTATGGAAGAACGATCAGTTCATGAAAGCAGCA GAAATACACAACGGCGCTATTTTCGCTAGCAGCATGGAAGGCCAATGGCTATTTACAGGAGGCTGGGACAAGACTGTTCATGTTCAGGAAATCTCGGGGG ATGAACTCCAAGTAGAGATCAGAGTCATTGGATCGATCCCAAGTAGTTTTGTCGTAACTGCTTTGTTGTACTGGCAAGGGAAGCTTTTCATCGGCTATGG TGATCGCACTATCAAGGTACTACATTCGATTGTGCAAATCGTTTCCAGGTGA
AA sequence Show only first row Show all	>Lus10028560 pacid=23164570 polypeptide=Lus10028560 locus=Lus10028560.g ID=Lus10028560.BGIv1.0 annot-version=v1.0 MELPECPVCLQSYDGDETLPRVLPCGHTACESCLKSLPERYHLTVRCPACTQLVKFPSSLGPSSLPKNIDLLRLIPDTANKDRSCSKIGADLLESSFLPR LWSDEFYSTWRKWILPHDAVSVEDGEERRGLFKVGDAGKEEKGTVFKLSYVAKIMNCLYEMSEEKRKDLGSILKIGEKRSGRVCQVHGLWSDLDDGALYC VSERMNDVMSLGEMSGFSMMAGMEICEVVMSLHLEGVIAGGLGLDCFAFDDFGHVSLSLNQVLALGEASWKDVSGVVGIGNRELGALVGEFLRRDEYLSP EALFEIFGGSVSSVGYRSDVWSLALIFVRLLVGEQFTEEMLACLDRFVSEMSEKDGLDFEGLYNRLMEKASHLLESKCGEELQSLQKLLCECLNFQIEKR PSVVDVWKCIREMVIGVKFDAGPRFDKLTGMCLVLGEMCHVAKGKSEMQNDDELQEEEENVDEFQETGTNAIEGLVEGKVKCTDLQGHLDCVTGFAVGGG FLFSSSFDKSVCVWSLQDFSHVHTFKGHEHKVMAVIYTEEFQEPSCISADSGGGIYLWTIRNPLEQEPSKKWYEQKDWRYSGIHALATAGNGYLYTGSGD RLIKAWSLQDGTLSCTMAGHKSVVSTLSVCNGVLYSGSWDGTVRLWSLSDHSLLTVLGEDIPGGISTSVLSVIADKNIIVATHENGNLKVWKNDQFMKAA EIHNGAIFASSMEGQWLFTGGWDKTVHVQEISGDELQVEIRVIGSIPSSFVVTALLYWQGKLFIGYGDRTIKVLHSIVQIVSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	0	1
AT1G70160			unknown protein		Lus10029209 [exp]	5.0	0.9029
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	6.5	0.8647
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	6.7	0.8628
AT1G58030		CAT2	cationic amino acid transporte...		Lus10005671 [exp]	6.9	0.8836
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	8.9	0.8670
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	9.6	0.8907
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	9.6	0.8922
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	10.4	0.8944
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	12.6	0.8766
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	14.2	0.8807

Compare expression of checked genes

Lus10028560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.