Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21600 338 / 3e-116 PTAC6 plastid transcriptionally active 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018866 [exp] 506 / 0 AT1G21600 370 / 1e-128 plastid transcriptionally active 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078900 [exp] 357 / 7e-124 AT1G21600 399 / 5e-140 plastid transcriptionally active 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028562 pacid=23164537 polypeptide=Lus10028562 locus=Lus10028562.g ID=Lus10028562.BGIv1.0 annot-version=v1.0 ATGGCCGTCGCAGCCACTACTCTCAACCTCTTCGCCCCACCGCCTTCCATTTCGAGCTTCTACACAACAAAATCCAGCTCTGCATCGTTCCCTTCCTCCC GATTCAACTCCACCAGCAGCGACTACTTCCGCTCAGCTCACGGAACTCGGAGGACATTTGTACCGAAGGCGGTTGGCGGCGACGCAGCTGACAGTGCCGA GGATTTCTTCATAGAGGATGAGGTCGAGGAAGTGGACGAGGACTATGACTTGGAGTACGAACCTTCTAAGGAGGAAGACGACAGCGCGATAGTGTACGGC AGGAGTTTCATGTCGACTCCAGGATGGAACTCGGAGAAGATCGTCGATTACAGGATCAACGAGGAGGATTTCCACAAGATCAGCTTGCTTGAGTGCGATT TCTTCATCAGGAGGCCGCCGGATCCTGATCGTGATGTTTATGATTTCAGGGAGATGTATGTTACTCCGCCGGATACTGATATCTATGCTATCCCCAGAGT TCTTGCTCCGTTGCCGGGAAAGCTTATACGATGTGCAAAGACAAATTACGGATGCTACAATGTGACCGAACCACCTGTCGATGCACTCCGAGATCCGCTG TATAAAACTGATAGGGAGGTTTGGAAGGTTTTCTTGACTAAGCACTACAAGAACCGCAGGCTGGGAGATCCTGAGTTCATGTTGGACTTTGAGGAAATCT ATGTCTTGGATTCCAAAACAAAGTCCATAACCAGAGGAAAAGTAGTGGTGACAGTTCGTGATGGGAGGAATCGGGATAGAAAGAACGACTTGCTTGTAAT ACGAGATAATGGAAGCTCCTTCAAAATTATCGATTCGGCTCAAAGAGATGACCCCACGACTGTAATCGAGAAGGAGGAATGGGCGAAAGGCCGACAAGAC ATGGAGAGACACCTCAGCAAGCTGCGCGACTTTGAAGTGTCGAACTGGCTCTAA
AA sequence Show only first row Show all	>Lus10028562 pacid=23164537 polypeptide=Lus10028562 locus=Lus10028562.g ID=Lus10028562.BGIv1.0 annot-version=v1.0 MAVAATTLNLFAPPPSISSFYTTKSSSASFPSSRFNSTSSDYFRSAHGTRRTFVPKAVGGDAADSAEDFFIEDEVEEVDEDYDLEYEPSKEEDDSAIVYG RSFMSTPGWNSEKIVDYRINEEDFHKISLLECDFFIRRPPDPDRDVYDFREMYVTPPDTDIYAIPRVLAPLPGKLIRCAKTNYGCYNVTEPPVDALRDPL YKTDREVWKVFLTKHYKNRRLGDPEFMLDFEEIYVLDSKTKSITRGKVVVTVRDGRNRDRKNDLLVIRDNGSSFKIIDSAQRDDPTTVIEKEEWAKGRQD MERHLSKLRDFEVSNWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10028562 [exp]	0	1
AT1G21600		PTAC6	plastid transcriptionally acti...		Lus10018866 [exp]	1.0	0.9415
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10041186 [exp]	4.9	0.8932
AT3G55400		OVA1	OVULE ABORTION 1, methionyl-tR...		Lus10005156 [exp]	10.4	0.9027
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	11.0	0.9046
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	11.1	0.9009
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	11.5	0.8983
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	13.4	0.8791
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	15.3	0.8922
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10003872 [exp]	15.6	0.8664
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	16.7	0.8904

Compare expression of checked genes

Lus10028562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.