Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43130 393 / 8e-140 LCV2 like COV 2 (.1) AT2G18460 314 / 2e-108 LCV3 like COV 3 (.1) AT2G20120 313 / 3e-108 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT2G20130 313 / 4e-108 LCV1 like COV 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018869 [exp] 504 / 0 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10028563 [exp] 397 / 2e-141 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10018868 [exp] 367 / 9e-129 AT1G43130 387 / 1e-136 like COV 2 (.1) Lus10011099 [exp] 313 / 6e-108 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10014314 [exp] 300 / 1e-101 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10026023 [exp] 300 / 1e-101 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10043220 [exp] 285 / 4e-98 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065800 [exp] 400 / 1e-142 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.005G148000 [exp] 355 / 6e-125 AT1G43130 319 / 2e-110 like COV 2 (.1) Potri.006G158100 [exp] 332 / 2e-115 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.018G082100 [exp] 326 / 3e-113 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.005G124100 [exp] 305 / 6e-105 AT2G18460 365 / 2e-128 like COV 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [flax] [poplar] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Lus10028564 pacid=23164500 polypeptide=Lus10028564 locus=Lus10028564.g ID=Lus10028564.BGIv1.0 annot-version=v1.0 ATGGCGGCGGATAAAGAATCGGCGTCGAGCTCAGAGAAGCAAGATCTGACACACCACGAGTCCGACTCGGAAGATGTTCTGAAGTCTCCTCCTAGCTCCC CTGGCTCCTCCACTCGCAAGGCGTGTTATGCTGTTCTGCAAAGTTGGGTATCCAAGAAGTTCATGACTGGATGCATTGTTCTGTTTCCAGTTGCGGTAAC TTTCTTGGCCACCTGGTGGTTTATCGAGTTTGTCGATGGTTTCTTCAGTCCGATATATGAACAGCTTGGGATTGATATATTCGGCCTTGGATTCATAACG TCGCTACTTTTCATATTCTTCGTGGGGATATTTGCTTCATCATGGTTTGGTGCCACTGTTTTTTGGCTGGGTGAATGGCTTATAAAGCAAATGCCATTCG TGAAGCACTTATATTCGGCCTCCAAACAACTCAGTTCAGCTATCTCTCCTGACCAAAATACTACAGCTTTCAAAGAGGTTGCAATCATTCGCCATCCTCG TCAAGGGGAATATGCAATCGGGTTCATCACATCAACTGTCCTCCTTCAGAAAGAAGATGGTGATGAAGAACTGTGCAGTGTTTACGTTCCGACGAACCAT CTGTATATTGGAGACATTTTTCTCGTCAATTCGAAAGATATCATCCGGCCAAATCTGTCGATTCGGGAAGGAATAGAGATCATTGTATCGGTAGGTATGA CAATGCCCCAAACAATAGCTCCAGCAGAAAGGATCTCTCCTCATCAGAAAAGTGGGACTCAACTCAACAGAATGGTATAA
AA sequence Show only first row Show all	>Lus10028564 pacid=23164500 polypeptide=Lus10028564 locus=Lus10028564.g ID=Lus10028564.BGIv1.0 annot-version=v1.0 MAADKESASSSEKQDLTHHESDSEDVLKSPPSSPGSSTRKACYAVLQSWVSKKFMTGCIVLFPVAVTFLATWWFIEFVDGFFSPIYEQLGIDIFGLGFIT SLLFIFFVGIFASSWFGATVFWLGEWLIKQMPFVKHLYSASKQLSSAISPDQNTTAFKEVAIIRHPRQGEYAIGFITSTVLLQKEDGDEELCSVYVPTNH LYIGDIFLVNSKDIIRPNLSIREGIEIIVSVGMTMPQTIAPAERISPHQKSGTQLNRMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43130		LCV2	like COV 2 (.1)		Lus10028564 [exp]	0	1
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	1.0	0.9581
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	2.0	0.9438
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	3.0	0.9271
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	7.7	0.8996
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	8.5	0.9163
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	11.4	0.9071
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10038334 [exp]	16.4	0.9003
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	16.4	0.9187
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	18.4	0.8751
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	21.5	0.9129

Compare expression of checked genes

Lus10028564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.