Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76730 470 / 2e-168 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018870 [exp] 343 / 3e-119 AT1G76730 320 / 3e-109 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G194800 [exp] 483 / 3e-173 AT1G76730 515 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01812 [flax] [poplar] 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family
Representative CDS sequence Show only first row Show all	>Lus10028565 pacid=23164645 polypeptide=Lus10028565 locus=Lus10028565.g ID=Lus10028565.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGCCGATAGAAACAAGGATGGCGACGATGATGATCCGAAAGCTTGGAAGTGGATTATCCGGAAGAGGATTTGGGATCTGATGGAGGCCC GGAACTTCGCGCAGAATCCCCGACCCGTTCACCACCGGATCCCCAACTTCGTCGGAGCCCCGGCTGCTGCTCAAAAGCTAGGTGAACTGGAAGCATTCAA AACTGCCAACTGTGTGAAGGTAAACCCAGATTCACCTCAGAAGCAAGTTAGATTCTTAACACTTTCTGATGGGAAGAAACTACTAACTCCTCAACCCAGG CTAAGAACCGGGTTCTTCTCGGTGCTAGACCCTCTCGGTGGCCGCGGGTTGAATCCGAGCACCATACTCGAGGCGTGCACCTCTGTTGGAGCAGCGAAAT ACGGGAGGCCGATCGGGTTGGATGAGAAGATAAGAGTTGACCTTATTGTCATTGGCTCTGTTGCTGTTGATCCCACCACTGGAGCTCGACTCGGTAAGGG GGAGGGATTTGCAGAGCTCGAATACGGAATGTTGCGGTACATGGGCGCCATTGATGACTCTACACCGGTTGTCACTTCAGTGCACGACTGCCAATTGGTA GACGATATCCCGGTGGAGAAACTGCTGATCCACGATGTTCCTGTTGACATCATATGCACACCAACACGAGTCATATTCACGAATACCGGGATTCCGAAGC CTCAAGGGATCTATTGGGATAAACTGTCGCCCGAGAAACTCGGGCAGATTCGCATACTGAGAGATCTCAAAAGTCGAATCGAGAAGGAAACTGGACAGAA ACTTCCCACCGGACCGTCGGAGAAACTACCCCCTACTGCCCAGCGGAAGAGGCGCAGATGA
AA sequence Show only first row Show all	>Lus10028565 pacid=23164645 polypeptide=Lus10028565 locus=Lus10028565.g ID=Lus10028565.BGIv1.0 annot-version=v1.0 MAEEADRNKDGDDDDPKAWKWIIRKRIWDLMEARNFAQNPRPVHHRIPNFVGAPAAAQKLGELEAFKTANCVKVNPDSPQKQVRFLTLSDGKKLLTPQPR LRTGFFSVLDPLGGRGLNPSTILEACTSVGAAKYGRPIGLDEKIRVDLIVIGSVAVDPTTGARLGKGEGFAELEYGMLRYMGAIDDSTPVVTSVHDCQLV DDIPVEKLLIHDVPVDIICTPTRVIFTNTGIPKPQGIYWDKLSPEKLGQIRILRDLKSRIEKETGQKLPTGPSEKLPPTAQRKRRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	0	1
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10010082 [exp]	2.4	0.9035
AT2G23390			unknown protein		Lus10038137 [exp]	3.2	0.9064
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	5.3	0.8864
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	5.4	0.8617
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	5.6	0.8603
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Lus10030326 [exp]	5.6	0.9088
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	5.9	0.8969
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	7.7	0.8778
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10036446 [exp]	11.0	0.8838
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	13.0	0.8989

Compare expression of checked genes

Lus10028565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.