Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43190 651 / 0 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3) AT3G01150 114 / 5e-28 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT5G53180 110 / 2e-26 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT3G19130 46 / 5e-05 ATRBP47B RNA-binding protein 47B (.1) AT1G22760 46 / 6e-05 PAB3 poly(A) binding protein 3 (.1) AT1G71770 45 / 0.0001 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G11650 44 / 0.0002 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G42890 43 / 0.0003 AML2, MEI2 MEI2-like 2 (.1.2.3) AT4G34110 42 / 0.0008 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018871 [exp] 784 / 0 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10014931 [exp] 108 / 3e-25 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10005233 [exp] 107 / 5e-25 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10038820 [exp] 95 / 5e-21 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10030688 [exp] 87 / 2e-18 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10014392 [exp] 42 / 0.001 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G066000 [exp] 660 / 0 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.005G194700 [exp] 657 / 0 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.004G123300 [exp] 112 / 9e-27 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.015G020800 [exp] 111 / 1e-26 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.017G085400 [exp] 111 / 1e-26 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.012G029300 [exp] 108 / 9e-26 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.002G175000 [exp] 50 / 8e-07 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G135800 [exp] 48 / 1e-05 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.012G133600 [exp] 47 / 1e-05 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.001G191500 [exp] 43 / 0.0004 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10028566 pacid=23164609 polypeptide=Lus10028566 locus=Lus10028566.g ID=Lus10028566.BGIv1.0 annot-version=v1.0 ATGGCTGAGCCATCTAAAGTCATCCATGTTCGTAATGTTGGGCATGAGATTTCTGAGAATGATCTGCTTCAACTGTTCCAGCCATTTGGGGTTATAACGA AGCTTGTCATGCTTCGCGCTAAAAATCAGGCTCTCCTTCAAATGCAAGATGTTAACTCAGCAATAAGTGCCCTACAGTTCTACACAAATGTCCAGCCAAC GATAAGAGGTAGGAATGTTTATGTCCAGTTCTCTTCACATCAAGAGCTAACTACAATGGATCAAAGCTCTCAAGGGCGAGGTGATGAGAAGTCAGCTGGT CAGCTTCTTCTAGCTTCTCCTCCTATTATTTCTGTGGAATGTGTGACCGTTCTTGCTTCTTTTTCTGTATTTACATGGTGGTTAGGGTTCCAAGCTCTTA TCCAATACCAGGTACGCCAGAGTGCCGTATCTGCAAGGACTTCTCTTCAGGGACGCAATATTTATGATGGTTGTTGTCAGCTTGACATTCAATTCTCCAA TTTGGATGAGTTGCAAGTGAACTACAACAATGATCGGTCGAGAGATTTCACCAACCCAAGCCTACCTTCAGAACAGAAGGGTCGATCCTCGCAGTCTGGA TATGGAGATGGGGGAGGTATCTATGACCATCCATCCTCGGCTGCTGGTGCAGGTGCATATCCACAGATGGGGAATGCTGCTGCAATTGCTGCTGCCTTTG GTGGAGGGTTGCCTCCTGGAATTAGTGGAACAAATGAGCGGTGTACTGTTCTCGTATCCAATTTAAACCCTGATAGTGTAGACGAAGACAAGCTTTTCAA CCTGTTTTCTCTGTACGGAAACATTGTCAGAATCAAACTTCTCCGCAACAAACCGGACCACGCACTCGTCCAGATGGGCGATGGGTTCCAAGCCGAGCTG GCAGTCCACTTCTTGAAGGGTGCGATGCTTTTCGGGAAGCGCCTCGAAGTGAACTTCTCGAAGCATCCAAACATAACTCAAGGCGCCGAAACCCACGAGT ACATTAACTCCAACCTCAACCGCTTCAACCGAAACGCTGCAAAGAACTACCGCTACTGCTGCTCCCCTACGAAGATTCTGCACATCTCTTCCTTGCCTCA GGAGATTGCCGAAGACGAGATCGTGACTCACCTTGAAGAGCATGGCAGGATCGTTGCTATTAAAGTTTTCGAGATGAACGGAAAGAAGCAGGCTCACGTC CAGTTCGACTCTGAGGAAGAAGCCACCGAAGCTCTCGTCTGCAAGCATGCCACCTCTCTTGGTGGATCTGTCATCCGGATCTCCTTCTCCCAGCTCCAGT CGATCCGTGAAGGCTCATGA
AA sequence Show only first row Show all	>Lus10028566 pacid=23164609 polypeptide=Lus10028566 locus=Lus10028566.g ID=Lus10028566.BGIv1.0 annot-version=v1.0 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVNSAISALQFYTNVQPTIRGRNVYVQFSSHQELTTMDQSSQGRGDEKSAG QLLLASPPIISVECVTVLASFSVFTWWLGFQALIQYQVRQSAVSARTSLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPSLPSEQKGRSSQSG YGDGGGIYDHPSSAAGAGAYPQMGNAAAIAAAFGGGLPPGISGTNERCTVLVSNLNPDSVDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAEL AVHFLKGAMLFGKRLEVNFSKHPNITQGAETHEYINSNLNRFNRNAAKNYRYCCSPTKILHISSLPQEIAEDEIVTHLEEHGRIVAIKVFEMNGKKQAHV QFDSEEEATEALVCKHATSLGGSVIRISFSQLQSIREGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10028566 [exp]	0	1
AT3G09180			unknown protein		Lus10016953 [exp]	4.7	0.7879
AT1G23220			Dynein light chain type 1 fami...		Lus10034609 [exp]	12.0	0.7669
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	14.4	0.7870
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10023754 [exp]	15.8	0.7981
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	15.9	0.7509
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	18.4	0.7863
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	18.7	0.7717
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	21.9	0.7861
					Lus10039504 [exp]	35.0	0.6711
AT2G46980			unknown protein		Lus10009259 [exp]	36.1	0.7562

Compare expression of checked genes

Lus10028566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.