Plant FIBer expression Database

Lus10028567 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39570 41 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018873
[exp]
412 / 2e-146 ND 37 / 0.010
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10028567 pacid=23164452 polypeptide=Lus10028567 locus=Lus10028567.g ID=Lus10028567.BGIv1.0 annot-version=v1.0
ATGGCCGATGAGGACCAGCCCCGACACACCGACCGCGGCCTATTCGGCTGGGGCAAGGACAAGTCCAACGACGACAAGAAGCCCTCGTCGGAGGAGGACA
CCGCTGGTGGCTACGGTGGCCGGAAAACCGAGACTGGCTACGGTGGCACTGTTGACAGGTTCGGGTCGGATGATGTGAAAACTGAAACCGGTTATGGTCG
GAAAGAAAGCGGTCAGACCGAAACCGGTTACGGTAGCACGAACAAGTATGGGTCCGATGACCAAACTACCAAGACTGGATACGGTGGGTCAGCTGACCAG
ACCGATAACCGCTATAGTAGCACCAAAAAGTACGGACCGGATGACCATAACACCGAGAGTGGTTATGGTCGCAAGACAGGTGGTTATGGGTCCACCGACC
AGACCGAAACCGAGTATGGTTCCACCAACAAGTACGGATCTGATGATGTCAAAACAGAGTCCGGTTACGGCCGTAAGGAGACTGATTATGAGTCAACTGA
GCAGACCGAAACTGGCTATGGTAGCACCAACAAGTATGGATCTGATGATCAGCAAACTGAGTCCGGTTACGGCCGCAAAGAAACCAGTTATGGGTCAACT
GAGCAGACCGAAACTGGATATGATGGCACCAACAAGTACGGATCTGATGATCAGCAAACCGAATCCGGTTATGGTCGTAAGGAGACCGGTTATGGATCGA
CCGAGCAAACCCAAACTGGCTATGGAGGCAAAAACTCGAGCTACGAGTCGTCTGAGCAGGCAGGAACTGAATACAGCGAAACCAACAAGTACGGATCTGA
CGAGCAGGAGACCGGAGAGAAGAAGAAGCATGGCTTCTTTGGCTAA
AA sequence
>Lus10028567 pacid=23164452 polypeptide=Lus10028567 locus=Lus10028567.g ID=Lus10028567.BGIv1.0 annot-version=v1.0
MADEDQPRHTDRGLFGWGKDKSNDDKKPSSEEDTAGGYGGRKTETGYGGTVDRFGSDDVKTETGYGRKESGQTETGYGSTNKYGSDDQTTKTGYGGSADQ
TDNRYSSTKKYGPDDHNTESGYGRKTGGYGSTDQTETEYGSTNKYGSDDVKTESGYGRKETDYESTEQTETGYGSTNKYGSDDQQTESGYGRKETSYGST
EQTETGYDGTNKYGSDDQQTESGYGRKETGYGSTEQTQTGYGGKNSSYESSEQAGTEYSETNKYGSDEQETGEKKKHGFFG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10028567
[exp]
0 1
AT1G12630 AP2_ERF Integrase-type DNA-binding sup... Lus10027413
[exp]
1.4 0.9144
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Lus10006594
[exp]
2.6 0.9144
Lus10018873
[exp]
3.0 0.8627
AT5G52250 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOG... Lus10005742
[exp]
3.5 0.8884
ATCG00120 ATCG00120.1, AT... ATP synthase subunit alpha (.1... Lus10004894
[exp]
5.2 0.8998
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Lus10006593
[exp]
5.7 0.8961
ATCG00490 ATCG00490.1, RB... ribulose-bisphosphate carboxyl... Lus10032825
[exp]
6.7 0.8895
ATCG00680 ATCG00680.1, PS... photosystem II reaction center... Lus10001686
[exp]
7.5 0.8840
ATCG00480 ATCG00480.1, AT... ATP synthase subunit beta (.1) Lus10032827
[exp]
11.0 0.8607
AT2G04865 Aminotransferase-like, plant m... Lus10035574
[exp]
12.1 0.7787

Lus10028567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.