Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43245 209 / 5e-60 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018874 [exp] 786 / 0 AT1G43245 347 / 1e-112 SET domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G193500 [exp] 291 / 4e-90 AT1G43245 262 / 2e-79 SET domain-containing protein (.1) Potri.005G193701 [exp] 148 / 9e-40 AT1G43245 120 / 3e-30 SET domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028568 pacid=23164636 polypeptide=Lus10028568 locus=Lus10028568.g ID=Lus10028568.BGIv1.0 annot-version=v1.0 ATGGAGATGAGAGCCAGAGAGGAAGTGGAGATAGGCTCCGACGTGACGCCGGCCATATCTCCGATATCGTATGCCCTCCACGATTCGTTCCTTAGTTCCC ACTGCTCCTCGTGCTTCTCTCCTCTCCCCGATCCGCCATTCCTGCCTGCCGGCCACCGTCATCTCTCCTCATCTCCCGTGTTCTACTGTTCAGATATATG TTCCTCCACCGATTCATCGATCCATTTCTCCTCCGGCGAGTTTCACCTCCTCAGCTCCTCGCCTCCTTCTTCGTCAGCGGATCTCCGATCCGCACTCCGC CTCCTCCGATCGGCTTCTTTCTCTCCTTCTAATGACAGGATGTCAGGTTTGTTGACAAATCGAGAAAAACTACTCGCTGAGGATGACGAGATGTCCGATC GAGTCGGCATCGGAGCTAAGGTGATGGGGGCTGTGACACGGGAAAAAACGATAGACGGTGAAGGACTGGTCGAGGAGGAGGCGGCGCTGTGTTTGGTGAT TACCAATGGAGTTGAAGTTCTTGATTCAAGATCCCGATCGATCGGGATCGCAGTCTACGATTCTACCTTCTCCTGGATCAATCACAGCTGCTCTCCAAAC TCCTGCTACCGATTCCTTTTCTCTCCGCCTGCTGGGTCGCCGGATTCTGCTCTGATGATCGTTCCTTCTGGTTCTGAGGTGGATAATGATGCTGCCGCCG GCGATCGGATGAGAAACTTCGGCGGGGGTTACGGGCCGAGGATTGTAGTGAGGAGCATTAGAAGGGTTGAGAAAGTAAGAAAGTCAGAGCTATGGTTGAA ATACAGATTCATCTGCAGCTGTCCACGCTGCAGTTCATCATCATCACCTTCATCCTACGTTGATCATGCTTTACAGGACATTTCAGCTTCGAGTTCACAA CTCTTCGATGCAGCTCAAGCTAACGAAATGCTGACCGATTATGTCGACGAAGCCATAACAACCTTCCTCCTCTCAGAAGGCGACGATCCCGAACCTTGCT GTGCACAGGTTGAACGCCTCCTCATTGCAGGACTCAATCAACCGGATATGATTCTCCGGTTGCATCCTCTCCATCACCTCTCCCTCAATGCATACACAAC GCTAGCTTCTGCATACAGCATTCGCGCCAGCATACACGAAGCTTTCGACGATTCCAGGACCAGTGCTGCATACTCATTCTTCCTCGCTGCTGCAGCTAAC CGCCTCTTCAACTTCGAGCCTTCACTGATCGTTTCGGTCTCGAACTACTGGGCAAGTGCTGGAGAAGCCTTGCTGAGACTTGTCTCAATCTCAAGCACTA CTAGTGCTACTACTACCTCCCTTTCTGAGCATCATCGTTGCTCGAAATGCCGGTTCATGGATGTTGGTATAGCCATAGCCAAAGCCAATGCTTGCTTTAC ATCGATATCGTTGGAGCTTGTCGGTTGTATCAGGAGCTATTCAAGGAAAGTGTGGTTCTTTCTGTCGAAGGCATGCCAGTTCTTGTCACGGTTCAACGAT ACGACGGTTTTCGATTCAATTCAGAAGCCAGTCTCCACTCCTTGTGATCGAATTCGAGGATTTGGATTCGCGGATCGCAAGATTAGGACGGATGTTATGC AGCTTGGTGCACATTGCTTGGTCTATGGAGGATTTCTATCGACCATTTGCTACGGTCGTGATCATTCCCCTTGGACTGATAAGATTCGAAAATTTCTTCA CTTGACTTCTTTGCTAGTAGATGAAATGATGATTCTGAATTCGGTTTCTACAAAGTAG
AA sequence Show only first row Show all	>Lus10028568 pacid=23164636 polypeptide=Lus10028568 locus=Lus10028568.g ID=Lus10028568.BGIv1.0 annot-version=v1.0 MEMRAREEVEIGSDVTPAISPISYALHDSFLSSHCSSCFSPLPDPPFLPAGHRHLSSSPVFYCSDICSSTDSSIHFSSGEFHLLSSSPPSSSADLRSALR LLRSASFSPSNDRMSGLLTNREKLLAEDDEMSDRVGIGAKVMGAVTREKTIDGEGLVEEEAALCLVITNGVEVLDSRSRSIGIAVYDSTFSWINHSCSPN SCYRFLFSPPAGSPDSALMIVPSGSEVDNDAAAGDRMRNFGGGYGPRIVVRSIRRVEKVRKSELWLKYRFICSCPRCSSSSSPSSYVDHALQDISASSSQ LFDAAQANEMLTDYVDEAITTFLLSEGDDPEPCCAQVERLLIAGLNQPDMILRLHPLHHLSLNAYTTLASAYSIRASIHEAFDDSRTSAAYSFFLAAAAN RLFNFEPSLIVSVSNYWASAGEALLRLVSISSTTSATTTSLSEHHRCSKCRFMDVGIAIAKANACFTSISLELVGCIRSYSRKVWFFLSKACQFLSRFND TTVFDSIQKPVSTPCDRIRGFGFADRKIRTDVMQLGAHCLVYGGFLSTICYGRDHSPWTDKIRKFLHLTSLLVDEMMILNSVSTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43245			SET domain-containing protein ...		Lus10028568 [exp]	0	1
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	69.0	0.8134
AT1G28540			unknown protein		Lus10025433 [exp]	113.1	0.8121
					Lus10000359 [exp]	135.8	0.7901
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10001328 [exp]	158.5	0.8000
AT4G05220			Late embryogenesis abundant (L...		Lus10020066 [exp]	223.7	0.7821

Compare expression of checked genes

Lus10028568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.