Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018876 [exp] 268 / 2e-92 ND / Lus10028571 [exp] 235 / 1e-78 ND / Lus10018877 [exp] 234 / 5e-78 ND / Lus10028109 [exp] 231 / 1e-76 ND / Lus10029786 [exp] 226 / 1e-74 ND / Lus10042813 [exp] 227 / 2e-73 ND / Lus10042472 [exp] 221 / 3e-73 ND / Lus10028110 [exp] 217 / 3e-71 ND / Lus10042473 [exp] 213 / 4e-68 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067000 [exp] 252 / 3e-85 ND / Potri.005G193200 [exp] 249 / 3e-84 ND / Potri.001G307100 [exp] 229 / 2e-76 ND / Potri.001G306932 [exp] 208 / 3e-68 ND / Potri.019G002400 [exp] 204 / 2e-66 ND / Potri.001G307000 [exp] 197 / 7e-64 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08787 [flax] [poplar] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Lus10028570 pacid=23164563 polypeptide=Lus10028570 locus=Lus10028570.g ID=Lus10028570.BGIv1.0 annot-version=v1.0 ATGGAGGGTTTTTCAAAGCTTGTTCTTATAACTGTGGTGGTGGTGGCAATCTTGGGGCAAAATGGTCAGTTCAATCTTCTTCAATCTGCCTCTGCAGATG CTGATCCGACGGCTGGGTTTCACAAGGTGAAGCTAAGCGAACGTAACTTCGAGATTCAGAGACCTTACGATGTTCCCATTAGCAAGCGTTACAGCTTCAA GGATGGAGTCCGTAAGATGTGGGTCTATGGCAATGACAAGTCTCATAGCCCCGGTAGTCACACCCCGCCTCGAACTGAGATTCGTATCCAGGGGCTCGAT TATCACACGGGAGTGTGGCAAATGGAAGCCGAAGTCTACGTTCCCAAAGGCACATCCGGAGCGAGCCTGATGCAGGTTCACGGGGGCAAAGGCGTGTCGA GCACGGTCATGGTAAGGATATACAACGGAGACCTGAGGTACTACTCGGGAACCGTAATGGCACACAACATGTACGACAAGTGGTTCAAGATGAACATGAT CCACGATGCCGACAACCAGAAGGTGGCGGTCTACGTAGACGGGAAGGAGGTTTTCCGGCACGACGCTCGAGGGAAGGCGCCGGATTTTTACTTCAAGTGT GGGGTCTACGCCGCTCCCAAGGATCATAGCAATTATATGGAATCTAGGTGGAGGAACATCAAGATGTACAAGAAATAA
AA sequence Show only first row Show all	>Lus10028570 pacid=23164563 polypeptide=Lus10028570 locus=Lus10028570.g ID=Lus10028570.BGIv1.0 annot-version=v1.0 MEGFSKLVLITVVVVAILGQNGQFNLLQSASADADPTAGFHKVKLSERNFEIQRPYDVPISKRYSFKDGVRKMWVYGNDKSHSPGSHTPPRTEIRIQGLD YHTGVWQMEAEVYVPKGTSGASLMQVHGGKGVSSTVMVRIYNGDLRYYSGTVMAHNMYDKWFKMNMIHDADNQKVAVYVDGKEVFRHDARGKAPDFYFKC GVYAAPKDHSNYMESRWRNIKMYKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028570 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	3.0	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	4.2	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	5.2	1.0000
					Lus10024141 [exp]	6.0	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	6.7	1.0000
					Lus10013255 [exp]	7.3	1.0000
					Lus10013259 [exp]	7.9	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	8.5	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	9.0	1.0000
AT5G51105			Protein of unknown function (D...		Lus10043285 [exp]	9.6	0.9648

Compare expression of checked genes

Lus10028570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.