Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43620 791 / 0 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) AT3G07020 595 / 0 UGT80A2, SGT UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) AT5G24750 66 / 4e-11 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018878 [exp] 1250 / 0 AT1G43620 849 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Lus10011882 [exp] 581 / 0 AT3G07020 885 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020382 [exp] 556 / 0 AT3G07020 790 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10022815 [exp] 542 / 0 AT3G07020 742 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10024544 [exp] 532 / 0 AT3G07020 714 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009556 [exp] 531 / 0 AT3G07020 707 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10011883 [exp] 491 / 1e-167 AT3G07020 648 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10020381 [exp] 411 / 3e-136 AT3G07020 568 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009557 [exp] 184 / 7e-53 AT3G07020 261 / 6e-83 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067100 [exp] 875 / 0 AT1G43620 800 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.005G193100 [exp] 835 / 0 AT1G43620 805 / 0.0 TRANSPARENT TESTA 15, UDP-Glycosyltransferase superfamily protein (.1.2.3) Potri.014G178300 [exp] 588 / 0 AT3G07020 817 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.002G238600 [exp] 579 / 0 AT3G07020 839 / 0.0 UDP-glucosyl transferase 80A2, sterol glucosyltransferase, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.003G021100 [exp] 73 / 2e-13 AT5G24750 606 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase CL0113 [flax] [poplar] GT-B PF03033 [flax] [poplar] Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028572 pacid=23164587 polypeptide=Lus10028572 locus=Lus10028572.g ID=Lus10028572.BGIv1.0 annot-version=v1.0 ATGTGGTTGAATCTGAGTGATGAAATGGGGATTAGCTGTAACGATCATCCGTTAAGTAACTCAGAGGAAGGATTCGATGACAATCATGGTCTCGATGAAG ACTCGAGGACAGAGACTGCTGATGTTCCTGAATCAATGACCGAGGAATACAAGTATCCGGAAGAACAATTTACAGCGCCTACCAGTAAAGAATCCAAAAA CCAACCCGAGTTGCGTTCTGAGTCACAGATGGAGAGTTCGGATCAAGGAGGCTCTGAAACCACTTCTTCCCCTCGAAAAGGTATGCACATGTCGATTGGT ACAGCTTGTGGCTTGGAACACAGCATTAGTGAACCGGTTGGTGCTCACAGAAACCTGGTGGTTGACGAGAAGGACAACATCACCTTTTATAGATCCATCA CCGAGCAGCGATCTAAGCATGAACTGAAGTTCCACCGCTTCTTCGACCAAGAAAAGAACAAATTGCTTATAGAGCTAGTCAGAGTCCAACGCGATGGAAC AGTGGAAGTCGACTTAGACAAAAATGATTCGGTTACTTCAGAGTTGTTAGAGTTTCACTCGGTTGGCGGTGCATCCTTCATTATCGACGAAGACACCTCT GCTGTGAACAAACCGATTCCAAAGCTGAATATTGCGATCCTTGTGGTCGGAACACGAGGAGATGTCCAACCTTTCTTGGCCATGGCAAAGAGGCTTCAGG AATTCGGCCATCGTGTTAGGCTGGCGACTCATGCTAATTTTAGGAGTTTCGTGAAGGCAGCTGGTGTGGGCTTCTATCCATTGGGTGGCGACCCTCGGGT TTTGGCTGGATATATGGCTCGTAATAAAGGTTTGATCCCTTCGTCGCCTGGAGAGATATCCATTCAAAGGAAGCAAATGAAGGACATCATCGAGTCCCTT CTCCCGGCATGTACAGAACCAGACCCCGAAACTGGTGTCTCGTTTAAAGCTCAGGCCATTATCGCAAACCCTCCCGCTTATGGACACGTCCATGTTGCTG AAGCTCTAGGTGTACCGATTCACATTTTCTTCACAATGCCATGGACGCCGACATATGAATTCCCGCATCCTTTGGCTCGTGTACCTCAAAGTGCTGGCTA CTGGCTTTCCTACATCCTTGTGGATTTATTGATATGGTGGGGGATAAGAGGATACATCAATGACTTCAGGAAGAAACTGAAGCTTCAACCAATTGCTTAT TACAGCATGTACCATGGATCGATATCTCATCTTCCTACCGGTTATTTGTGGAGTCCGAGTCTTGTGTCGAAACCAATGGACTGGGGACCTCAAGTTGATG TAGTTGGCTATTGCTTCTTAAACCTTGCATCGAAATATGAACCTCGACGAGAGTTTACCGAATGGATACAGAGGGGAAAGAAGCCTATTTATATTGGGTT CGGAAGCATGCCTCTTGAAGATCCCCAGAAGACTATGGGAATTATACTCGAGGCGTTGAAAGAGACGGAGCAGAGAGGGATCATCGACCGAGGATGGGGT GGCCTGGGGAGTCTTGTGGAAGCCCCTTATGATGTTTTCCTCCTCGAGGACTGCCCTCACGATTGGTTGTTTCCTCAGTGTGCTGCTGTGGTTCATCATG GTGGTGCTGGCACAACCGCTACTGGGCTAAGAGCCGGGTGCCCGACGACCATAGTTCCATTCTTCGGAGACCAATTTTTCTGGGGAGATAGATTGTTCAA CAAGGGATTGGGACCTCAGCCTATCCCGATTTCCCAGCTCACCGTCGAAAACCTCTCGAGTGCTATACAATTCATGCTCCAGCCAGAGGTAAAAGATCGA GCAACAGAGATAGCGAAACTGGTCGACAACGAAGATGGCGTGGCAGGTGCTGTCAACGCTTTCCACAGGCAGTTGCCTTCTACGATGCCTTCGCCTGCTG CCTCCTCGTCTTCAGACTCCGACGATGAGCTTTCAAACGGCCTGCAATGGTTTTTCGCTAAAATCGGGACGATATGCTGCCTTGGTTGTAGTCCTAATTA G
AA sequence Show only first row Show all	>Lus10028572 pacid=23164587 polypeptide=Lus10028572 locus=Lus10028572.g ID=Lus10028572.BGIv1.0 annot-version=v1.0 MWLNLSDEMGISCNDHPLSNSEEGFDDNHGLDEDSRTETADVPESMTEEYKYPEEQFTAPTSKESKNQPELRSESQMESSDQGGSETTSSPRKGMHMSIG TACGLEHSISEPVGAHRNLVVDEKDNITFYRSITEQRSKHELKFHRFFDQEKNKLLIELVRVQRDGTVEVDLDKNDSVTSELLEFHSVGGASFIIDEDTS AVNKPIPKLNIAILVVGTRGDVQPFLAMAKRLQEFGHRVRLATHANFRSFVKAAGVGFYPLGGDPRVLAGYMARNKGLIPSSPGEISIQRKQMKDIIESL LPACTEPDPETGVSFKAQAIIANPPAYGHVHVAEALGVPIHIFFTMPWTPTYEFPHPLARVPQSAGYWLSYILVDLLIWWGIRGYINDFRKKLKLQPIAY YSMYHGSISHLPTGYLWSPSLVSKPMDWGPQVDVVGYCFLNLASKYEPRREFTEWIQRGKKPIYIGFGSMPLEDPQKTMGIILEALKETEQRGIIDRGWG GLGSLVEAPYDVFLLEDCPHDWLFPQCAAVVHHGGAGTTATGLRAGCPTTIVPFFGDQFFWGDRLFNKGLGPQPIPISQLTVENLSSAIQFMLQPEVKDR ATEIAKLVDNEDGVAGAVNAFHRQLPSTMPSPAASSSSDSDDELSNGLQWFFAKIGTICCLGCSPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10028572 [exp]	0	1
					Lus10023643 [exp]	1.4	0.8313
AT3G45890		RUS1	ROOT UVB SENSITIVE 1, Protein ...		Lus10001047 [exp]	4.9	0.8088
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	5.2	0.8127
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10018871 [exp]	6.5	0.8218
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	11.5	0.8218
AT3G22550			Protein of unknown function (D...		Lus10042606 [exp]	11.8	0.8162
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	13.7	0.8210
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10031508 [exp]	18.0	0.7587
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	21.5	0.8016
AT1G20410			Pseudouridine synthase family ...		Lus10005645 [exp]	21.7	0.7755

Compare expression of checked genes

Lus10028572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.