Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07050 657 / 0 NSN1 nucleostemin-like 1, GTP-binding family protein (.1) AT1G52980 214 / 2e-61 AtNug2 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) AT1G08410 141 / 2e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27200 137 / 3e-34 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02790 91 / 1e-19 EMB3129 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) AT2G41670 54 / 1e-07 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10650 47 / 4e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58370 44 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G22870 42 / 0.0006 EMB2001 embryo defective 2001, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018881 [exp] 833 / 0 AT3G07050 706 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10018858 [exp] 698 / 0 AT3G07050 622 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Lus10023835 [exp] 169 / 5e-45 AT1G52980 708 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10013359 [exp] 129 / 2e-31 AT1G08410 745 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004103 [exp] 127 / 8e-31 AT1G08410 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021017 [exp] 113 / 1e-26 AT1G52980 591 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Lus10006927 [exp] 84 / 2e-17 AT4G02790 462 / 2e-164 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10014672 [exp] 82 / 3e-16 AT4G02790 414 / 8e-142 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Lus10006578 [exp] 65 / 6e-11 AT4G10650 394 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241100 [exp] 676 / 0 AT3G07050 667 / 0.0 nucleostemin-like 1, GTP-binding family protein (.1) Potri.001G402500 [exp] 212 / 5e-61 AT1G52980 811 / 0.0 nuclear/nucleolar GTPase 2, GTP-binding family protein (.1) Potri.009G017000 [exp] 127 / 6e-31 AT1G08410 755 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G209900 [exp] 85 / 2e-17 AT4G02790 476 / 5e-169 EMBRYO DEFECTIVE 3129, GTP-binding family protein (.1) Potri.012G083100 [exp] 62 / 5e-10 AT4G10650 428 / 4e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G048900 [exp] 54 / 1e-07 AT2G41670 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G128000 [exp] 45 / 0.0001 AT5G58370 461 / 1e-158 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08701 [flax] [poplar] GN3L_Grn1 GNL3L/Grn1 putative GTPase CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10028574 pacid=23164646 polypeptide=Lus10028574 locus=Lus10028574.g ID=Lus10028574.BGIv1.0 annot-version=v1.0 ATGCCGAAAAAGAGCAAGAAGAGTAAGAGTAAGAGGATAACCTTGAAGCAGAAGCACAAGGTGATAAAGAAGGTGAAGGAGCACCACAAGAAGAAAGCCA AGGAGGCTAAGAAGCTTGTCCGCACCGGCAAGCAGAAGGTCGAGAAGGATCCAGGGATCCCCAATGACTGGCCTTTCAAGGAGCAGGAGCTCAAGGCTCT CGAAGCTCGTCGCGCTCGCGCTCTGGAGGAGATCGAGCAGAAGAAAGCTGACCGCAAGGAACGTGCTCGAAAGAGGAAGTTGGGGATACTAGAGGAAGAA GAGGATGCTGGAGTTGTGCCTGATGAGAAGAAGGCCAAGCAGCAGCATCATGTTGGAGTTGCTCAAAATCGGGATAGTGCAGATAGGGTGTTCTACAAGG AATTGGTCAAGGTGATCGAAGTATCGGATGTCATTTTGGAAGTTCTCGATGCTAGGGATCCGTTAGGTACACGCTGTGCTGATATGGAGAAGATGGTGAT GAAAGCTGGGCCCGAGAAGCATCTAGTCTTGCTTCTGAATAAAATCGATCTTGTTCCTCGAGAAGCTGTCGAGAAATGGCTCAAGTATCTTAGAGAAGAG CTACCTGCTGTTGCATTCAAGTGCAGTACTCAAGAACAGAGGTCAAATTTGGGTTGGAAGCCTTCCAAAAAGTCTGCAAAGCCGAGCAATTTGTTGCAAA CTAGTGATTGTCTTGGAGCTGATACTCTGATTAAGTTGCTGAAGAATTACTCTAGAAGTCACGATATTAAGAAGAGTATTACTGTTGGGGTGATCGGCCT ACCTAATGTCGGTAAGAGTAGTCTCATTAACAGTTTGAAAAGAAGCCATGTCGCAAATGTAGGTGCTACCCCTGGGTTGACGAGATCGTTGCAAGAGATT CAGTTGGACAAGAACGTTAAATTGGTCGATTGTCCCGGTGTTGTCATGCTGAAATCTCAGGAGAACGATGCGTCTGTTGCTCTTCGAAATTGCAAAAGGA TCGAGAAGTTGGATGATCCTGTTACTCCAGTGAAGGAAATTCTCAACCGCTGCCCTGAAAGGCTTATGGTTACACTGTACAAGATCCCGAGTTTTGAAGG TGTCGATGACTTCTTGCAGAAGTTGGCTACTGTAAGAGGACGGCTGAAAAAGGGTGGTATAGTAGATGTCGATGCTGCTGCTAGAATTGTATTACATGAT TGGAATGCAGGGAAGATTCCATATTACACTCTGCCTCCAACAAGGGACCAAGAGGGAGCTTCAGAGGCAAAGATAGTTACAGAGCTAGGCAAAGTGTTCA ACATTGACGAAGTCTACAATGGGGAGTCTTCGTTCATCGGAAGTCTGAAGTCGTTGGAAGACTTCAATCCAGTTGAAGTTCCTTCCAGCTTGCCTCTAAG TTTCGATCAGAGCATGCTAGAGGACAATCCGGTGCAAGCGGAAGCATCAGAAGCCGACACCGAGGAAATGAAGGACGCAAATGAAGACACATTAGGTGCA GTAGATAAGGCAAAGTCGAAGAATGCGACGAGCAGGCAGAACGAGAAGCTTTACGATGTGGAGGGCATGGTGAACAACAAGATGAAGAAAGCGGAGAGGA AGCGGAGGAAGAAGGCTGCTAAAGTGGATGCTATGGAGGATGGTGATGGTAATGATGACTATGACTTCAAAGTTGACTATAAGAAGAAGGGCTCGTCCGC CATGGATGAGGATGATGATGAAGAGGACGATGATGAGAAGATAATCGGTACGGTGCCGATGGCTGATGTTCAGTTTCCGGACGATGAGTGA
AA sequence Show only first row Show all	>Lus10028574 pacid=23164646 polypeptide=Lus10028574 locus=Lus10028574.g ID=Lus10028574.BGIv1.0 annot-version=v1.0 MPKKSKKSKSKRITLKQKHKVIKKVKEHHKKKAKEAKKLVRTGKQKVEKDPGIPNDWPFKEQELKALEARRARALEEIEQKKADRKERARKRKLGILEEE EDAGVVPDEKKAKQQHHVGVAQNRDSADRVFYKELVKVIEVSDVILEVLDARDPLGTRCADMEKMVMKAGPEKHLVLLLNKIDLVPREAVEKWLKYLREE LPAVAFKCSTQEQRSNLGWKPSKKSAKPSNLLQTSDCLGADTLIKLLKNYSRSHDIKKSITVGVIGLPNVGKSSLINSLKRSHVANVGATPGLTRSLQEI QLDKNVKLVDCPGVVMLKSQENDASVALRNCKRIEKLDDPVTPVKEILNRCPERLMVTLYKIPSFEGVDDFLQKLATVRGRLKKGGIVDVDAAARIVLHD WNAGKIPYYTLPPTRDQEGASEAKIVTELGKVFNIDEVYNGESSFIGSLKSLEDFNPVEVPSSLPLSFDQSMLEDNPVQAEASEADTEEMKDANEDTLGA VDKAKSKNATSRQNEKLYDVEGMVNNKMKKAERKRRKKAAKVDAMEDGDGNDDYDFKVDYKKKGSSAMDEDDDEEDDDEKIIGTVPMADVQFPDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	0	1
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	2.0	0.9430
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	2.4	0.9448
AT5G15810			N2,N2-dimethylguanosine tRNA m...		Lus10005696 [exp]	2.4	0.9254
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	3.5	0.9399
AT3G19440			Pseudouridine synthase family ...		Lus10027863 [exp]	3.9	0.9079
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	4.5	0.9363
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	5.3	0.9091
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	6.2	0.8818
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	6.3	0.9326
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	6.8	0.9003

Compare expression of checked genes

Lus10028574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.