Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44080 160 / 2e-47 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 135 / 3e-38 bZIP GBF4 G-box binding factor 4 (.1) AT2G41070 60 / 2e-10 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G56850 59 / 5e-10 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT1G49720 59 / 8e-10 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT2G36270 57 / 4e-09 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G34000 55 / 2e-08 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 55 / 2e-08 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT3G19290 54 / 4e-08 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT2G17770 49 / 9e-07 bZIP FDP, ATBZIP27 FD PARALOG, basic region/leucine zipper motif 27 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018857 [exp] 248 / 8e-83 AT5G44080 126 / 4e-35 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10029784 [exp] 168 / 4e-50 AT5G44080 166 / 7e-49 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042811 [exp] 94 / 1e-22 AT5G44080 86 / 2e-19 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028889 [exp] 72 / 4e-14 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10022720 [exp] 67 / 2e-12 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 60 / 5e-10 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 60 / 6e-10 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 57 / 4e-09 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002399 [exp] 57 / 6e-09 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192900 [exp] 163 / 2e-48 AT5G44080 142 / 5e-40 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G067400 [exp] 161 / 1e-47 AT5G44080 141 / 2e-39 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.008G010800 [exp] 59 / 7e-10 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 59 / 1e-09 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.002G090800 [exp] 57 / 3e-09 AT3G56850 136 / 9e-38 ABA-responsive element binding protein 3 (.1) Potri.009G101200 [exp] 57 / 3e-09 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.009G018500 [exp] 56 / 4e-09 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.002G125400 [exp] 54 / 3e-08 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.001G220700 [exp] 53 / 5e-08 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 53 / 7e-08 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10028575 pacid=23164548 polypeptide=Lus10028575 locus=Lus10028575.g ID=Lus10028575.BGIv1.0 annot-version=v1.0 ATGGCGACGTCGAAGGTGATTTCGTCGTCAAAGGCGATGTCTTCATCGTCGAAACCGAAGGATTCCGATCCATCCGCTTCTTTTTCTTCAGAAGCTGCAC GATCGCATCGATTTTCTTCCTCCGATCACCACCGCATCACAACCAACACCGGCAACGGCTTGTCAACGGCGATGACAGTCGACGGAGTGTTGCGCAGCGT GTACTCAGCTCCTCCTCATCCATTATCGGAGTCCGCACTCCCAAACGATCACTTATCCCTGATTACCAGCAACGAGAACGGGTTTGCACCGAGCAAGACG GCGGACGACATATGGAGGGATATAGTGTCGACAGGGAGGAAAGAACTGAAGGAGGAGGAGCCCGACGAGATGATGACGCTGGAGGATTTCCTGGCGAAGG CTGGAACATGCGAGGAAGAGGATGGTGAAGATAATGAGGTGAAGATGATTCCTATGCTATCGTTTGATTCCGCGAATGCGATTCAAATGTTGGATAAGGT GGAAGGCTCGATCGTCGGGTTGGGGAACAGTGGGAGAGGGAAGAGAGGTAGAGGTCCGGCAATGGAGCAGCAGTTGGATAAGGCTGCTCAGCAGAGGCAG AAGAGGATGATCAAGAATCGGGAGTCGGCTGCTAGGTCCAGAGAGAGGAAGCAGGCTTATCAAGTGGAACTGGAGTCTTTGGCAGTGAAGCTTGAGGAGG AGCATGAACAGCTACTGAAGGAAAGGGAAGAGCGTGCCAAGGAAAGGTTAAAGCAGATTATGGAGAATGTGGTGCCTGTCGAGGAGAGGGGAAGACCTCC ACGAAAGCTTCAAAGAGCTCGATCCTGGACGTGGTAG
AA sequence Show only first row Show all	>Lus10028575 pacid=23164548 polypeptide=Lus10028575 locus=Lus10028575.g ID=Lus10028575.BGIv1.0 annot-version=v1.0 MATSKVISSSKAMSSSSKPKDSDPSASFSSEAARSHRFSSSDHHRITTNTGNGLSTAMTVDGVLRSVYSAPPHPLSESALPNDHLSLITSNENGFAPSKT ADDIWRDIVSTGRKELKEEEPDEMMTLEDFLAKAGTCEEEDGEDNEVKMIPMLSFDSANAIQMLDKVEGSIVGLGNSGRGKRGRGPAMEQQLDKAAQQRQ KRMIKNRESAARSRERKQAYQVELESLAVKLEEEHEQLLKEREERAKERLKQIMENVVPVEERGRPPRKLQRARSWTW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10028575 [exp]	0	1
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	4.7	0.8917
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	5.8	0.9004
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10020519 [exp]	11.3	0.8604
AT5G19900			PRLI-interacting factor, putat...		Lus10019670 [exp]	13.4	0.8608
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	13.7	0.8561
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	14.6	0.8727
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10025337 [exp]	17.7	0.8617
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	18.1	0.8750
AT5G53940			Yippee family putative zinc-bi...		Lus10015416 [exp]	18.5	0.8259
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	23.7	0.8683

Compare expression of checked genes

Lus10028575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.