Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21090 143 / 7e-42 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018856 [exp] 320 / 8e-111 AT1G21090 181 / 2e-56 Cupredoxin superfamily protein (.1) Lus10029783 [exp] 192 / 3e-60 AT1G21090 172 / 1e-52 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G067600 [exp] 184 / 6e-58 AT1G21090 189 / 7e-60 Cupredoxin superfamily protein (.1) Potri.005G192800 [exp] 169 / 6e-52 AT1G21090 159 / 7e-48 Cupredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028576 pacid=23164465 polypeptide=Lus10028576 locus=Lus10028576.g ID=Lus10028576.BGIv1.0 annot-version=v1.0 ATGATGATGAACTCCAACCACCATTACCCCTTTCTTCATCTTCTTCTTCACTTCCTTTTCTTCACCACTTTCCCACTCCTCTGCCATTCCTCCGCCACCA TCCTCGTCGACGGCGTCTCCCCCTGGCAAAACCCTTCTCTCTTCGTCGGCGACTCTGTCATCTTCAAGCACAAGTATGGCTACAGCCTCTACATCTTCCA GAGCTACAATGCTTTTGATCTCTGCAACTTCACTCAAGCCACTCTCCTCAATAACCCCAACTCCCCTGCTTCAGGCTCTTACTCGTGGCACACTTCCAGA CCTGGGTTCTTCTACTTTGCATTCTCCAACGGTTCTTCCTCGTCGTGCGATCGTTACTCGGAGAAGCTTGCAATCAAGGTCTCACCGGCACCGGCGCCGA AATCTTCTCCTACTCCGGTTTCCGGTGGAGGAGTGTCGGCTTCTCCGGCATACCCATGGCCGTTTCAGCCACGGGAGAAGAGTGTTGCTGCTTGGGCGCC GTCGCCGGCACCAAATGCCGGCGGAGTAGGCGGAGGAAAGTATGGAGGAGCTAGCGCTCCGATGAAGGTGCCAAAGATGTTACCGGAGAAAGGAGGAGGA GTGCCGTTCATAAACAGTAATCCGGCGGTTCCTCTGCCGAGCGGGGAAGTTGATTCAGCCACCATTCGTCCTCTGCCTACCTCCGCCGATGCTAGCGGTG GTTGCAATAATCAGATGAAGAGGAAAGGCGTGATTGGTGTTATGAGTGCAATTTTCTTGACATGGCTATGGTTATGA
AA sequence Show only first row Show all	>Lus10028576 pacid=23164465 polypeptide=Lus10028576 locus=Lus10028576.g ID=Lus10028576.BGIv1.0 annot-version=v1.0 MMMNSNHHYPFLHLLLHFLFFTTFPLLCHSSATILVDGVSPWQNPSLFVGDSVIFKHKYGYSLYIFQSYNAFDLCNFTQATLLNNPNSPASGSYSWHTSR PGFFYFAFSNGSSSSCDRYSEKLAIKVSPAPAPKSSPTPVSGGGVSASPAYPWPFQPREKSVAAWAPSPAPNAGGVGGGKYGGASAPMKVPKMLPEKGGG VPFINSNPAVPLPSGEVDSATIRPLPTSADASGGCNNQMKRKGVIGVMSAIFLTWLWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	0	1
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	4.1	0.8585
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	4.2	0.8912
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	4.6	0.9019
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	7.5	0.8904
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10015356 [exp]	8.0	0.8590
AT5G65920			ARM repeat superfamily protein...		Lus10012491 [exp]	9.6	0.8004
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	10.2	0.8699
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	10.8	0.8890
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	11.8	0.8598
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	12.0	0.8675

Compare expression of checked genes

Lus10028576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.