Plant FIBer expression Database

Lus10028578 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18740 436 / 1e-152 Protein of unknown function (DUF793) (.1)
AT1G74450 425 / 3e-148 Protein of unknown function (DUF793) (.1)
AT1G43630 406 / 2e-140 Protein of unknown function (DUF793) (.1)
AT1G63930 250 / 3e-79 ROH1 from the Czech 'roh' meaning 'corner' (.1)
AT4G23530 191 / 7e-57 Protein of unknown function (DUF793) (.1)
AT4G11300 187 / 1e-55 Protein of unknown function (DUF793) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018883
[exp]
726 / 0 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1)
Lus10029782
[exp]
605 / 0 AT1G18740 477 / 1e-168 Protein of unknown function (DUF793) (.1)
Lus10042809
[exp]
600 / 0 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1)
Lus10028764
[exp]
249 / 4e-79 AT1G63930 477 / 3e-168 from the Czech 'roh' meaning 'corner' (.1)
Lus10017519
[exp]
141 / 5e-40 AT1G63930 233 / 5e-76 from the Czech 'roh' meaning 'corner' (.1)
Lus10018821
[exp]
44 / 0.0002 AT2G46080 431 / 5e-152 unknown protein
Lus10005122
[exp]
42 / 0.0005 AT2G46080 432 / 1e-152 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G067800
[exp]
539 / 0 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1)
Potri.005G192600
[exp]
535 / 0 AT1G18740 461 / 9e-163 Protein of unknown function (DUF793) (.1)
Potri.001G099700
[exp]
271 / 7e-88 AT1G63930 418 / 5e-145 from the Czech 'roh' meaning 'corner' (.1)
Potri.003G132100
[exp]
266 / 9e-86 AT1G63930 409 / 2e-141 from the Czech 'roh' meaning 'corner' (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0133 AT14A-like PF05633 BPS1 Protein BYPASS1-related
Representative CDS sequence
>Lus10028578 pacid=23164617 polypeptide=Lus10028578 locus=Lus10028578.g ID=Lus10028578.BGIv1.0 annot-version=v1.0
ATGCCGGCGACGGATTTCCAAGGAACGTCGGCAGCATTCGGGAGAGCGATACTCAGCCTGCGACGCGATCAGGTGCATTCCATGGACGGACACGGGAGCA
GCCATGTTCTTGAGAACGAGCTCGAGGCGTTTCAGAAGCTTGTAGGGGAGAGGTTCCTGGATCTGTCGTCTGTCAGATCCGACGACTTGCTATCCTTGCC
GTGGATCCAGAAGCTTCTGGACGCGTTCCTGTGTTGCCAGGAGGAGTTCCGGCTTATTCTGTCGAGGAACAAGGGCCACGTCATCAAGGCGCCGTTGGAT
CGGCTGGTGAATGACTTCTATGAAAGGAGCGTGAAGGCGTTGGATCTGTGTAACGCGATTCGTGATGGGATTGAGCAGATCAGGGAGTGGAAGAAGCTGC
TGGAGATTGTTCTCTGTGCGTTGGATAGTAATCAGAGGCTGCTTGGGGAAGGGCATTTCCGGAGGGCGAAGAAGGCGTTGATCGACTTGTCAATTTCGAT
GCTTGACGAGAAGGATTCGTCTTCCGGTGGCGCAATGTCGTCTCATAGGAATCGGTCGTTCGGGAGGCATCAGGGAGGAGGGTCTTCCTCGAGGGAGCAT
CTCCATCGTGGGATCGGGCATTTCAGGTCGTTGTCATGGAGTGTTTCGAGGTCGTGGTCTGCTGCTAGGCAGCTGCAAGCGATTGGGAATAACATTGTAG
CGCCCAGAGCCAATGAGGTTGTGGCTACCAGTGGTCTAGCCATTGCTGTTTTTACAATGAACTCTGTTTTGTTGTTTGTAATGTGGGTTCTCGTGGCGGC
AATTCCTTGTCAGGACAGAGGGTTGCAGGTTCATTTCTCGATTCCTCGTCACTTCGCGTGGGGAGCTCCGCTTTCGTCGATGCATGAGAGGGTGCTGGAA
GAATCTAGGAAGCGGGATAGGAGGAATGCCTGTGGATTGTTGAAGGAGATTTATCAGATGGATAAATGCTCCAGAGTGTTGACTGATTTGGCCGATTCTG
TTCAGTTTCCATTGGCGGAGGAGAAAGAGCGAGAAGTTAGGCAGAAAGTGCAGGAATTGGCGCAGATTTGTGAGGAGTTTAAAGAAGGATTGAACCCTTT
GGAGAGGCAAGTGAGGGAAGTGTTCCATAGAATCGTTCAAAGCCGGACTGAAGGGCTTCATTCTCTAGGAAGAGGGAATCACAATGATTAA
AA sequence
>Lus10028578 pacid=23164617 polypeptide=Lus10028578 locus=Lus10028578.g ID=Lus10028578.BGIv1.0 annot-version=v1.0
MPATDFQGTSAAFGRAILSLRRDQVHSMDGHGSSHVLENELEAFQKLVGERFLDLSSVRSDDLLSLPWIQKLLDAFLCCQEEFRLILSRNKGHVIKAPLD
RLVNDFYERSVKALDLCNAIRDGIEQIREWKKLLEIVLCALDSNQRLLGEGHFRRAKKALIDLSISMLDEKDSSSGGAMSSHRNRSFGRHQGGGSSSREH
LHRGIGHFRSLSWSVSRSWSAARQLQAIGNNIVAPRANEVVATSGLAIAVFTMNSVLLFVMWVLVAAIPCQDRGLQVHFSIPRHFAWGAPLSSMHERVLE
ESRKRDRRNACGLLKEIYQMDKCSRVLTDLADSVQFPLAEEKEREVRQKVQELAQICEEFKEGLNPLERQVREVFHRIVQSRTEGLHSLGRGNHND

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G18740 Protein of unknown function (D... Lus10028578
[exp]
0 1
AT1G18740 Protein of unknown function (D... Lus10018883
[exp]
1.0 0.9610
AT1G74450 Protein of unknown function (D... Lus10042809
[exp]
1.4 0.9549
AT1G01260 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) ... Lus10005966
[exp]
3.0 0.9133
AT5G01710 methyltransferases (.1) Lus10022682
[exp]
4.0 0.9091
AT2G01300 unknown protein Lus10009104
[exp]
4.9 0.8940
AT1G51200 A20/AN1-like zinc finger famil... Lus10004889
[exp]
5.9 0.8964
Lus10031606
[exp]
6.9 0.8845
AT5G17850 Sodium/calcium exchanger famil... Lus10005673
[exp]
7.4 0.9079
AT1G09070 (AT)SRC2, (AT)S... soybean gene regulated by cold... Lus10004500
[exp]
8.4 0.8851
AT5G01710 methyltransferases (.1) Lus10014232
[exp]
9.9 0.8847

Lus10028578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.