Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25280 561 / 0 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 554 / 0 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G43640 553 / 0 TUB AtTLP5 tubby like protein 5 (.1) AT2G47900 447 / 6e-156 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT2G18280 407 / 1e-140 TUB AtTLP2 tubby like protein 2 (.1.2) AT1G47270 388 / 8e-133 TUB AtTLP6 tubby like protein 6 (.1.2) AT5G18680 366 / 1e-124 TUB AtTLP11 tubby like protein 11 (.1) AT3G06380 360 / 4e-122 TUB ATTLP9 tubby-like protein 9 (.1) AT1G53320 322 / 3e-107 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 66 / 1e-11 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018884 [exp] 804 / 0 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2) Lus10029780 [exp] 679 / 0 AT1G76900 615 / 0.0 tubby like protein 1 (.1.2) Lus10034106 [exp] 660 / 0 AT1G25280 585 / 0.0 tubby like protein 10 (.1.2.3) Lus10043482 [exp] 650 / 0 AT1G25280 589 / 0.0 tubby like protein 10 (.1.2.3) Lus10042807 [exp] 530 / 2e-178 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10033977 [exp] 412 / 2e-142 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 405 / 2e-140 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3) Lus10014299 [exp] 378 / 2e-128 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10010833 [exp] 375 / 1e-127 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192300 [exp] 723 / 0 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 711 / 0 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.005G192400 [exp] 706 / 0 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.007G023400 [exp] 419 / 5e-145 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G121600 [exp] 413 / 1e-142 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.008G195200 [exp] 410 / 6e-142 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 410 / 7e-142 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G228500 [exp] 404 / 6e-139 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 397 / 3e-136 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.001G390200 [exp] 331 / 7e-111 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10028579 pacid=23164539 polypeptide=Lus10028579 locus=Lus10028579.g ID=Lus10028579.BGIv1.0 annot-version=v1.0 ATGTCGTTCCGTAGTATAGTTCGTGATGTTCGTGACGGGTTCGGGAGCTTATCCAGGAGGAGTTTCGACGTTAGGCTTCCCGGTCACCATAGAGGGAAGT CTCATGGCTCGGTTACCGACTTACACGACCAACTGGTGGTGATCCAGAGTAGCCGTTGGGCTAGCCTCCCTCCAGAGCTTTTACGCGATGTCATCAATAG GTTGGAGGCCAGTGAGGGCACTTGGCCTTCCCGTAAACACGTTGTTGCGTGTGCTGCTGTTTGCAAGGCGTGGCGAGAAATGTGTAAAGAGATTGTCCGA TGCCCCGAGTTCTCCGGGAAGATCACTTTCCCGGTGTCCTTGAAGCAGCCTGGCTATAGGGACGGGCCGATCCAGTGCTTCATTAAGCGAGACAAGTCGA AATTAACTTACCATCTTTTCCTTTGCCTTAGCCCTGCATTGCTTGTTGAAAACGGGAAGTTCCTCCTCTCTGCTAAACGCACGAGAAGAACTACATGCAC GGAGTACATAATCTCCATGGACGCCGATAACATTTCGAGATCGAGCGGAACATATATCGGAAAGCTAAGGTCGAATTTCCTCGGCACGAGATTTATAATT TACGACACGCAACCGCCTTACACCAACGCTCAAATCTTGCCACCAGGACGAAGCAGCAGAAGGTTCTACTCGAAGAAAGTCTCGCCCAAGGTCCCTACTA CAGGAAGCTACAACATCTCTCAAATCTCGTACGAACTCAATGTCCTAGGGACGAGGGGTCCACGCAGGATGCACTGCACAATGCACTCAATCCCGACTTC GTCCCTCGAGCCAGGCGGTTCTGTGCCGGGCCAGCCTGAGATCCTGCTCCCCGGATCTCTCGAGGACTCGTTCCGGAGCAGTCTGTCCGTTTCCAAATCG ATCATGGACAGCTCGAGCGAGTTCAGCAGCTCTCGATTCTTCGCTCCACGAGACAATAATCCCGGTGGCGATACCGAAAACAAGGAAAGGCCGCTGGTTT TACGAAACAAGGCCCCTAGGTGGCACGAGCAGTTACAATGCTGGTGCCTGAACTTTCGAGGGAGGGTGACTGTGGCGTCGGTGAAGAACTTCCAGCTGAT CGCTGCGAGCCAGCCTGCCGCTGGTGCTCCTACACCTTCGCAGCCGGTGCAGTCGGATCACGATAAGATTATCGTGCAGTTTGGTAAGGTGGGGAAGGAT ATGTTCACCATGGATTACCGGTATCCGCTGTCGGCATTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACTAAGCTTGCTTGTGAATAG
AA sequence Show only first row Show all	>Lus10028579 pacid=23164539 polypeptide=Lus10028579 locus=Lus10028579.g ID=Lus10028579.BGIv1.0 annot-version=v1.0 MSFRSIVRDVRDGFGSLSRRSFDVRLPGHHRGKSHGSVTDLHDQLVVIQSSRWASLPPELLRDVINRLEASEGTWPSRKHVVACAAVCKAWREMCKEIVR CPEFSGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSGTYIGKLRSNFLGTRFII YDTQPPYTNAQILPPGRSSRRFYSKKVSPKVPTTGSYNISQISYELNVLGTRGPRRMHCTMHSIPTSSLEPGGSVPGQPEILLPGSLEDSFRSSLSVSKS IMDSSSEFSSSRFFAPRDNNPGGDTENKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAASQPAAGAPTPSQPVQSDHDKIIVQFGKVGKD MFTMDYRYPLSAFQAFAICLSSFDTKLACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25280	TUB	AtTLP10	tubby like protein 10 (.1.2.3)		Lus10028579 [exp]	0	1
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	2.8	0.9153
AT1G35830			VQ motif-containing protein (....		Lus10006941 [exp]	14.9	0.9049
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10039644 [exp]	16.0	0.8938
AT5G50350			unknown protein		Lus10033401 [exp]	16.0	0.8707
AT1G31130			unknown protein		Lus10028643 [exp]	18.4	0.8967
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	20.7	0.8504
AT4G29850			Eukaryotic protein of unknown ...		Lus10039596 [exp]	22.8	0.8427
AT3G54450			Major facilitator superfamily ...		Lus10024156 [exp]	25.5	0.9026
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	26.2	0.9029
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	30.5	0.8850

Compare expression of checked genes

Lus10028579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.