Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76870 323 / 2e-108 Trihelix unknown protein AT1G21200 268 / 2e-86 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10040 201 / 2e-60 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018886 [exp] 614 / 0 AT1G21200 335 / 2e-113 sequence-specific DNA binding transcription factors (.1) Lus10029777 [exp] 405 / 4e-140 AT1G21200 503 / 9e-178 sequence-specific DNA binding transcription factors (.1) Lus10042805 [exp] 399 / 1e-137 AT1G21200 496 / 8e-175 sequence-specific DNA binding transcription factors (.1) Lus10008643 [exp] 184 / 1e-53 AT3G10040 325 / 5e-107 sequence-specific DNA binding transcription factors (.1) Lus10035582 [exp] 184 / 2e-53 AT3G10040 326 / 2e-107 sequence-specific DNA binding transcription factors (.1) Lus10002481 [exp] 40 / 0.0001 AT2G38250 91 / 4e-24 Homeodomain-like superfamily protein (.1) Lus10004806 [exp] 42 / 0.0004 AT5G01380 239 / 5e-77 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068700 [exp] 301 / 4e-99 AT1G21200 445 / 1e-154 sequence-specific DNA binding transcription factors (.1) Potri.005G191700 [exp] 297 / 1e-97 AT1G21200 444 / 3e-154 sequence-specific DNA binding transcription factors (.1) Potri.001G019200 [exp] 234 / 4e-73 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.006G117500 [exp] 191 / 5e-56 AT3G10040 249 / 3e-77 sequence-specific DNA binding transcription factors (.1) Potri.003G204700 [exp] 189 / 1e-55 AT1G21200 212 / 1e-63 sequence-specific DNA binding transcription factors (.1) Potri.016G096300 [exp] 182 / 3e-53 AT3G10040 249 / 7e-78 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028581 pacid=23164554 polypeptide=Lus10028581 locus=Lus10028581.g ID=Lus10028581.BGIv1.0 annot-version=v1.0 ATGGAGGGCAATGCATCACAAGGAGGCATGATATCTCGTGTCCCTCCTTTCGTCGACTTGCAAGGATCGATGACTAGAATTCATCACCGCCACGCACAAC AACAACATGAGGGGTTTGCACTCACTATGGGGAGAGCGAAGAATCTGAATCATAGTGATGATGACAATGACGAAGACGATGATGAATTGAATCGAACAAA GAAGGGTTCTTTGTCGTCATCTTCGCATTGGCAACGAGTGAAGTGGACGGAAACCATGGTCAAACTCTTGATAACTGCCGTGTCTTACGTAGGAGAAGAA GGTTCCGATTGTTGTGGTGGGAATGGTAAGAAGAGAACTTTTGTGGCTCTACAGAAGAAAGGTAAGTGGAAATCGGTTTCGAAAGCCATGTCCGAGAGAG GCTTTCTCGTGTCTCCGCAGCAGTGCGAGGACAAGTTCAACGATCTGAACAAACGGTACAAGAAGCTGAACGACATCATCGGGAGAGGAACTTCTTGCCA GGTTGTCGAAAACCCTGCTCTCCTCGATGGCATAGACTATCTCTCCGAGAAGGAGAAAGGCGATGTTAGGAAGATACTTAGCTCGAAGCATTTATTCTAT GAGGAGATGTGTTCGTACCATAACGGGAATAGGCTTCATCTGCCTCATGATCCTGCGTTGCAGCGGTCGTTGCAGCTGGCTCTTAAGAGCAATCGTGGGA ATGACGATTTTGATGATGTGGATGATGACGAAGATGATGATGAGGATGATGACGAGGATGGTGATGAGGATGGTGGTGATGGTGATGGAAAGAGGTTAAG GCAAGAAGATGTTGACATGAACCAAGTGTGTCATGAAACGAGTTCGAAAGGAGGTTTGGTGCAGAAGGAGTGGATCGAGTCTCGTACACTGCAGTTAGAG GAAGAGCGACTGCAGATCGAAGTGGAGAAGCTGGAGCTGGAGAAGGAACGGTTCAGGTGGCAGAGGTTTAGTAGGAAAAGAGATCAGGAATTGGAGATGT TGAAGATGGAGAACGAGAGAATGAAGCTTGAGAATGAGCGGATGAAGCTCGAATTGAAGCGTAAGGTAATGAGTGCTGATTTCAGCTGA
AA sequence Show only first row Show all	>Lus10028581 pacid=23164554 polypeptide=Lus10028581 locus=Lus10028581.g ID=Lus10028581.BGIv1.0 annot-version=v1.0 MEGNASQGGMISRVPPFVDLQGSMTRIHHRHAQQQHEGFALTMGRAKNLNHSDDDNDEDDDELNRTKKGSLSSSSHWQRVKWTETMVKLLITAVSYVGEE GSDCCGGNGKKRTFVALQKKGKWKSVSKAMSERGFLVSPQQCEDKFNDLNKRYKKLNDIIGRGTSCQVVENPALLDGIDYLSEKEKGDVRKILSSKHLFY EEMCSYHNGNRLHLPHDPALQRSLQLALKSNRGNDDFDDVDDDEDDDEDDDEDGDEDGGDGDGKRLRQEDVDMNQVCHETSSKGGLVQKEWIESRTLQLE EERLQIEVEKLELEKERFRWQRFSRKRDQELEMLKMENERMKLENERMKLELKRKVMSADFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10028581 [exp]	0	1
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	1.0	0.9565
					Lus10021189 [exp]	1.4	0.9182
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	4.5	0.8872
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031836 [exp]	6.6	0.8808
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	8.1	0.8926
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021278 [exp]	14.1	0.8834
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000948 [exp]	15.7	0.8864
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	24.2	0.8917
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	25.5	0.8833
AT4G19140			unknown protein		Lus10023813 [exp]	26.8	0.8769

Compare expression of checked genes

Lus10028581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.