Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76890 127 / 1e-32 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 123 / 4e-31 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 115 / 2e-28 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G03680 97 / 4e-22 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 94 / 4e-21 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G28300 64 / 5e-11 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 63 / 7e-11 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018887 [exp] 171 / 6e-48 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 149 / 6e-40 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10042806 [exp] 148 / 8e-40 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 135 / 2e-35 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 119 / 4e-30 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 114 / 2e-28 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10023872 [exp] 97 / 1e-22 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10035570 [exp] 98 / 2e-22 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 97 / 2e-22 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G191900 [exp] 136 / 1e-36 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 134 / 3e-35 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 134 / 7e-35 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 133 / 9e-35 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 123 / 5e-31 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.011G147400 [exp] 121 / 2e-30 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.001G309100 [exp] 115 / 1e-28 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 112 / 1e-27 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.008G025600 [exp] 103 / 2e-24 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.010G235000 [exp] 100 / 2e-23 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028582 pacid=23164551 polypeptide=Lus10028582 locus=Lus10028582.g ID=Lus10028582.BGIv1.0 annot-version=v1.0 ATGGACGCGACGTTTCGGGACGCCAGTGTGAAAGGACCTCTCTGGGATGACGTTTCCAGGAAAATGGCGGAGCTTGGATATCATCGAAGCTCGAAGAAAT GCAAAGAGAAATTTGAGAACGTTTACAAGTACCACAAACGGACTAAAGACGGCCGCACCGCCAAACACGACGGCAAAACCTACCGTTTCTTTCAAGAGCT CGAAGCCTTCGACAGCCACCTCTCCCCAGCCGGAGCTCCTCCTCCGCCACCGCAGCAGCACAAGCCCGCCGTTCAATTACCATTTCCAGCCGTCAATCCA CCTCCTGCTCCCCCGCCGACGCACAAACCGGCTGTCCAATTACAAATTCCAGCCGTGAATCCGCCTCCTCCCGCCACTGTTCCATCGACAGCAGCCGTCC TCCCGCCGCAGTCGGAGGCGGAGATCCAGGGCCGCGGGGGCGGCAGGAACAAGAGGAAGCGGAAGTGGCAGGACTTGTGGGAGCGGCTGATGAGGGAGGT TGTGAATAAGCAAGAAGAGATGCAGAGGAAGTTCTTGGAAGCGATTGAGAAGCGAGAAAAGGAACGGATCACCAGGGAAGAGTACTGGAGAAACCAGGAG ATGGCTCGGATCAATCGAGAACGAGAGATCCTAGCTCAGGAGAGATCCATCGCCGCCTCTAAAGACGCCGCCGCCATGTCTTTCCTCCAGCCGCTCGCCG AAAATTCCGATCCCGATCTCGATCTCCTCCGCTACCGCCGCTCCTCCTGCTCCTCCGCCGCCGCTAGTTCAGCTTCCTCAAGTCATCCAAGCCACTCCTC CTCCGCCACCACCTCCGCAACCTCAGCAGCCTCAACCGGTGCCGCTGCCATCTACAACGACAGCATTAGCTCCTATGCCTCAGCAATCAACGGCGGAAGC AGAGCATCAACTACGGAACCAACCCCAATTGGAGAATGTGAGCTCGTCTCGATGGCCGAAGGTCGAGATCGAAGCGTTGATTGA
AA sequence Show only first row Show all	>Lus10028582 pacid=23164551 polypeptide=Lus10028582 locus=Lus10028582.g ID=Lus10028582.BGIv1.0 annot-version=v1.0 MDATFRDASVKGPLWDDVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRTAKHDGKTYRFFQELEAFDSHLSPAGAPPPPPQQHKPAVQLPFPAVNP PPAPPPTHKPAVQLQIPAVNPPPPATVPSTAAVLPPQSEAEIQGRGGGRNKRKRKWQDLWERLMREVVNKQEEMQRKFLEAIEKREKERITREEYWRNQE MARINREREILAQERSIAASKDAAAMSFLQPLAENSDPDLDLLRYRRSSCSSAAASSASSSHPSHSSSATTSATSAASTGAAAIYNDSISSYASAINGGS RASTTEPTPIGECELVSMAEGRDRSVD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	0	1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028583 [exp]	1.0	0.9674
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	2.0	0.9329
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	3.5	0.9251
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	5.5	0.9169
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011262 [exp]	9.5	0.8796
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	10.6	0.8816
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	10.7	0.9159
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Lus10005075 [exp]	11.1	0.8794
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10007885 [exp]	11.4	0.9033
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	15.2	0.9143

Compare expression of checked genes

Lus10028582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.