Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 112 / 7e-30 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 110 / 5e-29 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 104 / 5e-27 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 93 / 6e-23 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 67 / 9e-14 Trihelix Homeodomain-like superfamily protein (.1) AT3G10000 56 / 5e-10 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G03680 51 / 4e-08 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G25990 43 / 3e-05 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 41 / 8e-05 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018887 [exp] 128 / 3e-35 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 112 / 2e-29 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10028584 [exp] 109 / 5e-29 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 109 / 2e-28 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 108 / 2e-28 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 96 / 4e-24 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 93 / 6e-23 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10009184 [exp] 87 / 1e-20 AT1G76890 275 / 1e-83 Duplicated homeodomain-like superfamily protein (.2) Lus10015924 [exp] 86 / 4e-20 AT5G28300 231 / 2e-68 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068400 [exp] 109 / 1e-28 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 108 / 2e-28 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.005G192000 [exp] 105 / 3e-27 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 104 / 6e-27 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.001G454500 [exp] 104 / 8e-27 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.001G309100 [exp] 103 / 1e-26 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 102 / 4e-26 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.013G039100 [exp] 87 / 1e-20 AT5G28300 292 / 3e-90 Duplicated homeodomain-like superfamily protein (.1) Potri.018G049500 [exp] 81 / 5e-19 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 81 / 1e-18 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028583 pacid=23164628 polypeptide=Lus10028583 locus=Lus10028583.g ID=Lus10028583.BGIv1.0 annot-version=v1.0 ATGAAGAGGATTGGTTACAACCGGAGTGCCAAGAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAAGC GGCCCGAGGATTCGAAAACCTGTCCGTATTTCCACCAATTGGATGCATTGTACCGGGAGAGACAGAGCAATTTGGTCCCGATCCTCGTCCAGCCCGAGCA ACAATGGCCTCCGCAGCCGGCTGCAGTTGCTTCGCAACAACCTGCCCCACCACCACCGCATCCGGTCCATCAGCACAGACCGGATGCCGTGATGGAGGAT ATGGAGAGCGAGGACGACAATGAGGATGATGATGATGAGGAAGGCGATGATGACCACGATGGTGGTAGTTATGAACTTGTCTCGAATAAGCCGACATCGA TGAACATGTGA
AA sequence Show only first row Show all	>Lus10028583 pacid=23164628 polypeptide=Lus10028583 locus=Lus10028583.g ID=Lus10028583.BGIv1.0 annot-version=v1.0 MKRIGYNRSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRERQSNLVPILVQPEQQWPPQPAAVASQQPAPPPPHPVHQHRPDAVMED MESEDDNEDDDDEEGDDDHDGGSYELVSNKPTSMNM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028583 [exp]	0	1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	1.0	0.9674
AT1G71020			ARM repeat superfamily protein...		Lus10043471 [exp]	3.5	0.8960
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	7.3	0.8573
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	9.5	0.8829
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	10.6	0.9225
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011262 [exp]	12.2	0.8672
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	16.1	0.9002
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	23.4	0.9044
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	24.0	0.8732
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	24.4	0.8839

Compare expression of checked genes

Lus10028583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.