Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76880 233 / 7e-70 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 220 / 3e-65 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 162 / 2e-43 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G28300 142 / 1e-36 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 100 / 8e-23 Trihelix Homeodomain-like superfamily protein (.1) AT5G03680 99 / 5e-22 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 97 / 2e-21 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT3G25990 68 / 4e-12 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 62 / 1e-10 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 49 / 3e-06 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018888 [exp] 507 / 9e-177 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 199 / 2e-58 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 171 / 2e-46 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 169 / 5e-46 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 166 / 1e-44 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 141 / 7e-37 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10028583 [exp] 110 / 7e-29 AT1G76880 125 / 3e-34 Duplicated homeodomain-like superfamily protein (.1) Lus10015924 [exp] 110 / 7e-26 AT5G28300 231 / 2e-68 Duplicated homeodomain-like superfamily protein (.1) Lus10009184 [exp] 108 / 8e-25 AT1G76890 275 / 1e-83 Duplicated homeodomain-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192000 [exp] 253 / 6e-78 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068400 [exp] 250 / 2e-76 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.019G010200 [exp] 228 / 3e-69 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 224 / 8e-68 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068600 [exp] 182 / 3e-51 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.018G049500 [exp] 159 / 6e-45 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 159 / 2e-43 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2) Potri.011G147400 [exp] 162 / 3e-43 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.001G454500 [exp] 162 / 3e-43 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.018G049700 [exp] 155 / 2e-41 AT1G76890 148 / 5e-38 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028584 pacid=23164504 polypeptide=Lus10028584 locus=Lus10028584.g ID=Lus10028584.BGIv1.0 annot-version=v1.0 ATGGGTACTATTCCATCGGGTGGTGGTAATAATGGTACTAGTACTACACCGGCGGCTAATAATACTACTATGTCTATTAACTTCACCATCACGCCACCTC ATCATCAGCAACAGAGCCATCTTAGTCCTACGGTGGTTACACCGGCTGAGCCGATCTCGTCGTCTCAGCCGTTGAATCCGAGCCCTCAGAGCGTGTTCCA CCCTTCTTACAACCATCATCGGGGGCAGCATCATAATGGGCATCGTAGCATTTCTGCTACGACGCACTTGTTCTCGAGCTCCACCTCCTCGTCGACTGCT TCCGACGAAAAGATGGAGGAAAAGGGTACGAAGTCAAGAAAGAGGAAGAGGAAGCTGAGGGATTTCTTTCATAGGTTGACTAAGGATGTTATTAAGAAAC AGGAGGAACTGCAAAAGAGGTTTCTCGAAACGGTCGAGAAGCTGGATCGCGAGCGGCTTGATCGTGAAGGGGCATGGCGGGTTCAAGAGATGGCTAGGAT CAACCGTGAGCATGAGATTCTTATTCAGGAGCGGTCCACTGCAGCTGCTAAGGATGCTGCTGTGTTGGCGCTCCTCCAAAAAGTTTCTGGAGGAGGAGTT AGAGGAGCACAAATTACTCCTCGTAAGCTCTCATTACCATCTCCACCACCTCCTATTCTATCACAACCGGCATTAGTATCGCAGAACAATCCAACTCATA TCATGGTGCAAAAGCAAAAGCCAGCGCCAATAACAACAAATGTCGGAGGAAGGATAGAGAGCAATGGGGAAGACGTGCATACAGTAGCGACGATAACGAC AACCACCTCTTCAAGGTGGCCAAAACCGGAGGTACTTGCACTGATAGGACTAAGAACACAATTGGATGAGAAATATCAAGAGAATGTACCAAAAGGACCG TTATGGGAAGAGATATCGACAGAGATGAAGAAATTAGGATACAACCGAAATGCAAAGAGGTGCAAAGAAAAATGGGAGAACATCAACAAATACTTCAAAA AAGTGAAGGAAAGTAGTAGGAAGAGGCCGGAGGACTCGAAGACTTGTCCATACTTCCACCAATTGGATGCATTGTATAGGGAGAAGAGCAAGGTAATGGA GCAACCAACCAACAATCCGACAATCAGTAGTGGCGCCGCCTATATAGAGGCTAACCCAATCAGGGCGGTCGAGCCGGCAACAACAATACACCATTGGTTT CCGCCTCCACCTCCACCGCCACCTCATCCTCCAACAGAAGAGGAGGACGAAGACGAAGAGGTCGATGAGGACGATTACGAGAATGAGGAAACCGACGAAG AGGTCGAAACCGGTGTCAGAGGGTTCGAGATTGTGCATAACAAACCGGCCATGGTGGTCGGAGGCAATGGTGAATAA
AA sequence Show only first row Show all	>Lus10028584 pacid=23164504 polypeptide=Lus10028584 locus=Lus10028584.g ID=Lus10028584.BGIv1.0 annot-version=v1.0 MGTIPSGGGNNGTSTTPAANNTTMSINFTITPPHHQQQSHLSPTVVTPAEPISSSQPLNPSPQSVFHPSYNHHRGQHHNGHRSISATTHLFSSSTSSSTA SDEKMEEKGTKSRKRKRKLRDFFHRLTKDVIKKQEELQKRFLETVEKLDRERLDREGAWRVQEMARINREHEILIQERSTAAAKDAAVLALLQKVSGGGV RGAQITPRKLSLPSPPPPILSQPALVSQNNPTHIMVQKQKPAPITTNVGGRIESNGEDVHTVATITTTTSSRWPKPEVLALIGLRTQLDEKYQENVPKGP LWEEISTEMKKLGYNRNAKRCKEKWENINKYFKKVKESSRKRPEDSKTCPYFHQLDALYREKSKVMEQPTNNPTISSGAAYIEANPIRAVEPATTIHHWF PPPPPPPPHPPTEEEDEDEEVDEDDYENEETDEEVETGVRGFEIVHNKPAMVVGGNGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028584 [exp]	0	1
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	1.0	0.9577
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	8.8	0.9423
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	9.5	0.9239
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	11.0	0.9374
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	14.9	0.9244
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	15.1	0.9396
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	19.2	0.9334
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	19.2	0.9384
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	20.8	0.9356
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	21.0	0.9281

Compare expression of checked genes

Lus10028584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.