Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43650 323 / 1e-109 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 274 / 6e-90 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 201 / 4e-61 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 194 / 1e-58 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 192 / 1e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 189 / 1e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 187 / 6e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 186 / 9e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 184 / 5e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 181 / 2e-53 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018889 [exp] 639 / 0 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028586 [exp] 489 / 7e-171 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018890 [exp] 265 / 6e-88 AT1G43650 237 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008708 [exp] 211 / 8e-65 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 213 / 2e-64 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 210 / 3e-64 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 209 / 3e-64 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 209 / 3e-64 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033510 [exp] 206 / 1e-63 AT5G64700 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192100 [exp] 361 / 6e-124 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 354 / 4e-121 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.019G004100 [exp] 258 / 1e-83 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 249 / 3e-80 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 226 / 6e-71 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 204 / 3e-62 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 198 / 2e-60 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 198 / 5e-60 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148600 [exp] 196 / 5e-60 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 197 / 2e-59 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10028585 pacid=23164472 polypeptide=Lus10028585 locus=Lus10028585.g ID=Lus10028585.BGIv1.0 annot-version=v1.0 ATGGAAACCCATAAACCTTACACAGCAATGCTATTAGTACAAATCATATATGCAGGAATGGCTTTGTTCTCCAAAGCTGCAATCTCTGGAGAACAAGGGA TGAACTCTTACATCTTTGTAACTTATCGTCAGGCTTTCGCAACGATTGCATTGGCTCCATTTGCTCTGTTCATGAAAAGTGAAAAGGCTGTTCCTTTGTC ATCCAAGGTTCTTCTCAAGATCTTTCTCATCTCCTTCTTTGGGCTGGCCTTGAGCTTGAACCTTTACTCCATAGCAATCAGCTACACAACTGCAACTTTT GCTGCAGCAACCACTAATGTCATTCCTGCCATAACCTTCACAATGGCTCTCCTCTTCAGGATGGAGAGGCTGTCAATAAGGAAAGTTCATGGAATTGCCA AATTAGTTGGCTCTATGGTTGGTGTTTCAGGAGCAATTGTGTTTGCACTTGTGAAGGGTCCTGTTCTATTAAACAAACCGGAATCATCGAATCCTGACCA TCATCAGGAACTGGATTGGATCAAGGGCTCTCTGATCATGATCTTAGCCAACATACTTTGGTCACTGTGGGTTGTTCTTCAGGGAAGGATTGTGAAGGAA TATCCAGCTAAGGTGAGGCTAACAACTTTACAATGTGCATTCAGCTGCATACAATCAGCAGTTGCAGCAGCTGTGGTGAACAAGGATGTTTCTGCTTGGA AACTTGGATTGAATGTTCATCTTTACTCTGTTGTCTACTGTGGAGTGTTGGTGACAGCATTGACATATTGGCTACAGCTTTGGACAATACAGAGGAAAGG ACCAGTTTTCACTGCAATCTTCACTCCTTTGGCTCTAATCATCACTGCCATTTTCTCTTCTCTGGTTTGGCATGAAGTCCTCTACATTGGAAGTGTTGGT GGGACAGTTTTGTTAGTGGTTGGTCTCTACTTGGTGTTGTGGGGCAAAAACAAGGAAGAAAGAACACAAATTGGATTCAATGGGAAGATCATTAGCAATG AAGAAGAAGGCAAAACAACACCAAATCATTCTAAGGAAGAAATATCTGAAACAGAGTGTACTATACACATAAGTACTTAG
AA sequence Show only first row Show all	>Lus10028585 pacid=23164472 polypeptide=Lus10028585 locus=Lus10028585.g ID=Lus10028585.BGIv1.0 annot-version=v1.0 METHKPYTAMLLVQIIYAGMALFSKAAISGEQGMNSYIFVTYRQAFATIALAPFALFMKSEKAVPLSSKVLLKIFLISFFGLALSLNLYSIAISYTTATF AAATTNVIPAITFTMALLFRMERLSIRKVHGIAKLVGSMVGVSGAIVFALVKGPVLLNKPESSNPDHHQELDWIKGSLIMILANILWSLWVVLQGRIVKE YPAKVRLTTLQCAFSCIQSAVAAAVVNKDVSAWKLGLNVHLYSVVYCGVLVTALTYWLQLWTIQRKGPVFTAIFTPLALIITAIFSSLVWHEVLYIGSVG GTVLLVVGLYLVLWGKNKEERTQIGFNGKIISNEEEGKTTPNHSKEEISETECTIHIST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	0	1
AT5G59990			CCT motif family protein (.1.2...		Lus10042841 [exp]	3.5	0.8738
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	4.0	0.8703
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10002498 [exp]	4.9	0.8858
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	5.2	0.8908
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	5.5	0.8507
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	6.0	0.8444
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	7.3	0.8678
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	7.3	0.9064
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	8.5	0.9096
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	12.8	0.8751

Compare expression of checked genes

Lus10028585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.