Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43650 293 / 2e-94 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 245 / 2e-75 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 178 / 4e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 174 / 1e-48 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 173 / 3e-48 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 170 / 5e-47 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 166 / 6e-46 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 164 / 6e-45 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 163 / 1e-44 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 163 / 2e-44 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028585 [exp] 466 / 1e-161 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018889 [exp] 463 / 3e-160 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018890 [exp] 294 / 5e-96 AT1G43650 237 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10033510 [exp] 191 / 5e-55 AT5G64700 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 184 / 5e-52 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10022187 [exp] 179 / 1e-50 AT4G08300 270 / 7e-88 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 181 / 7e-50 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 177 / 2e-49 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 176 / 3e-49 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192100 [exp] 329 / 8e-108 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 328 / 2e-107 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.019G004100 [exp] 236 / 4e-72 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 234 / 2e-71 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 213 / 2e-63 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148600 [exp] 185 / 3e-53 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 185 / 6e-53 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 179 / 2e-50 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 176 / 2e-49 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 176 / 4e-49 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10028586 pacid=23164634 polypeptide=Lus10028586 locus=Lus10028586.g ID=Lus10028586.BGIv1.0 annot-version=v1.0 ATGGAAACCTATCAACCTTACATAGCAATGCTACTAGTACAGATAATATATGCAGGACTGGCTTTGTTCTCCAAAGCAGCCATCTCTGGAGAAGAAGGAA TGAACCCTTATGTATTCGTCACTTATCGTCAGGCTTTCGCAACGATCACATTGGCTCCATTCGCACTCTTCATCAGAAGTGAAAAGGCTGTTCCTTTGTC ATCCAAGGTTCTTCTCAAGATCTTCCTCATCTCCTTCTTTGGGCTGACCTTGAGCTTGAACCTTTACTCTATAGCAATCAACTACACAACCGCAACTTTC GCTGCAGCAACCACTAATGTCGTCCCTGCACTAACCTTCACATTGGCTCTCTTCTTGAGGATGGAGAGGCTGTCAATAAGGAAAGTTCATGGAATTGCCA AAGTAGTTGGCTCTTTGGTTGGTGTTTCAGGAGCAGTTGTGTTTGCAATCGTGAAGGGTCCTGCCCTTCTAAACAAACCGGAAAAATCGTCGAATCCTGG CCATCAATGTTGTCCGGATTGGATCAAGGGTTCTCTGATCATGATCTCATCCAACATACTTTGGTCAATGTGGATTGTTCTTCAGGGGGTTATAGTGAAG GAATACCCAGCTAAGGTCAGGCTAGCAACTTTACAATGTGCATTCAGCTGCATACAATCAGCTGTTGCAGCTGCTGTCCTTACCAAGAAGGATGTTTCGG TTTGGAAACTTGGGTGGAATGTTCATCTTTACTCTGTTGCCTACTGTGGGGTGATGGTGACAGCATTAACATATTGGCTACGGCTCTGGGCGATACAGAG GAAAGGACCAGTTTTCACCGCAATCTTCACTCCTTTGGCTCTCATCATCACTGCCATTTTCTCATCTCTAGTATGGCATGAAGTCCTTTACCTTGGAAGG CAGACTGTGGCACTCAACTTGTACTACTATGCACTCAACTACACTACTGCAACTTTTGCTGCTGCAACTACTAATGCCATTCCTGCCACCACCTTCATCC TAGCTGTCATATTGAGGATGGAGAGGTTGTCTATAAGAAAGGTTAACGGAATCGTGAAGATAGTTGGCTCGGTCGTTGGGGTTTCGGGAGCACTTGTGTT TGCCCTTGTAAAGGGACCAGCTCTAGTTAATAATCACCACGATGATTCTTCATCGAAACATGGTCCTCTTAAAGATTGCTGTTCAAGGGGAGAATGGATT AAGGGTTCTCTTGTCATGATCTCAGCCAACACTCTTTGGTCCTTGTGGCTTGTTCTCCAGGGTCGAATCGTGAAGCAATATCCGGCGAAAGTCCGGTTCA CCACAATACAATGTGTGTTCAGCTGCATGCAATCAACTCTTGTAGCAATTGTCTTGGATAGGGATGCTTCGGCTTGGAAACTCGGGTGGAACATTCATCT TTTCTCCATCGCCTACTGTGGTGTGATAGTGACAGCCCTAACATATTGGCTTCAACTATGGGCTATACAGAAGAAAGGACCTGTTTTTGCAGCAATGTTC ACTCCCTTGGCACTAATTGTAGCTGCAGTTTTCTCAGCACTTGTTTGGAAAGAAGTTCTTTACCTAGGAAGTGTAGGAGGGGCTGTTTTGCTGGTTGGTG GGCTCTATTTGGTGCTATGGGGGAAGAACAAGGAAGAAAGACAACAAAGCAAATCCAATGGCAGGATCAATAATCAAGATATGGAATCAGGATCTGAGAA TGCAGAATCGAAAGATGAAAGATCCACCGTAAGAGAGTGCAATAGTACACATCAGTTGAATGATGAGACGGAAATTGCAGCAAATAGCCGTTCGCTACAA GACCACGTAACCGTCACAACACCAATCAGCTAA
AA sequence Show only first row Show all	>Lus10028586 pacid=23164634 polypeptide=Lus10028586 locus=Lus10028586.g ID=Lus10028586.BGIv1.0 annot-version=v1.0 METYQPYIAMLLVQIIYAGLALFSKAAISGEEGMNPYVFVTYRQAFATITLAPFALFIRSEKAVPLSSKVLLKIFLISFFGLTLSLNLYSIAINYTTATF AAATTNVVPALTFTLALFLRMERLSIRKVHGIAKVVGSLVGVSGAVVFAIVKGPALLNKPEKSSNPGHQCCPDWIKGSLIMISSNILWSMWIVLQGVIVK EYPAKVRLATLQCAFSCIQSAVAAAVLTKKDVSVWKLGWNVHLYSVAYCGVMVTALTYWLRLWAIQRKGPVFTAIFTPLALIITAIFSSLVWHEVLYLGR QTVALNLYYYALNYTTATFAAATTNAIPATTFILAVILRMERLSIRKVNGIVKIVGSVVGVSGALVFALVKGPALVNNHHDDSSSKHGPLKDCCSRGEWI KGSLVMISANTLWSLWLVLQGRIVKQYPAKVRFTTIQCVFSCMQSTLVAIVLDRDASAWKLGWNIHLFSIAYCGVIVTALTYWLQLWAIQKKGPVFAAMF TPLALIVAAVFSALVWKEVLYLGSVGGAVLLVGGLYLVLWGKNKEERQQSKSNGRINNQDMESGSENAESKDERSTVRECNSTHQLNDETEIAANSRSLQ DHVTVTTPIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028586 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	4.2	0.7566
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10006066 [exp]	12.0	0.6782
AT4G02715			unknown protein		Lus10042605 [exp]	31.3	0.6906
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039426 [exp]	49.1	0.6330
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	59.0	0.6636
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	60.4	0.6597
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	71.7	0.6545
AT5G59070			UDP-Glycosyltransferase superf...		Lus10040757 [exp]	76.7	0.6427
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	79.1	0.6531
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	85.1	0.6003

Compare expression of checked genes

Lus10028586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.