Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16710 263 / 5e-91 glycosyltransferase family protein 28 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018891 [exp] 360 / 2e-129 AT4G16710 258 / 5e-89 glycosyltransferase family protein 28 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G036500 [exp] 281 / 3e-98 AT4G16710 253 / 4e-87 glycosyltransferase family protein 28 (.1.2) Potri.013G025600 [exp] 274 / 2e-95 AT4G16710 247 / 1e-84 glycosyltransferase family protein 28 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF04101 [flax] [poplar] Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028587 pacid=23164564 polypeptide=Lus10028587 locus=Lus10028587.g ID=Lus10028587.BGIv1.0 annot-version=v1.0 ATGGCAGAAACCGATCAGAAGAAGAAGAAAATGGTGTTTGTGACAGTCGGAACAACACTGTTCGATGCTCTGGTTAGAGCTGTGGATACCGAACAAGTGA AACGAGAATTGTCTCAAAGAGGATACACCCACCTTCTTATCCAGATCGGCCGTGGATCCTACTTTCCCCAGAAGTGCAAAGGAGATGAAGATGGATCTCT TTCAGTTGATTACTTCACTTTCTCTTCAAGCATTGCTGACCATATAAGAGCTGCATCTCTAGTCATCAGTCATGCTGGGTCAGGGAGCATATTTGAGACA TTGCGGCTCGGGAAGCCTCTAATTGTAGTGGTAAATGAAGATTTGATGGATAACCATCAGTGTGAACTTGCAGAAGAGCTAGCTGAAAGGAATCATCTCT ACTGTACTCGTCCTCACACGCTGCATAAGACGATCACGGACATGACGTTGGAGTCTCTTCTTCCGTACCCTGCAGGTGATGCCAAACCCGTGATTCATTT AATAAACCGATTTCTAGGTTTTCCAGATGACTAG
AA sequence Show only first row Show all	>Lus10028587 pacid=23164564 polypeptide=Lus10028587 locus=Lus10028587.g ID=Lus10028587.BGIv1.0 annot-version=v1.0 MAETDQKKKKMVFVTVGTTLFDALVRAVDTEQVKRELSQRGYTHLLIQIGRGSYFPQKCKGDEDGSLSVDYFTFSSSIADHIRAASLVISHAGSGSIFET LRLGKPLIVVVNEDLMDNHQCELAEELAERNHLYCTRPHTLHKTITDMTLESLLPYPAGDAKPVIHLINRFLGFPDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16710			glycosyltransferase family pro...		Lus10028587 [exp]	0	1
AT3G04780			Protein of unknown function (D...		Lus10001780 [exp]	1.0	0.8822
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030906 [exp]	9.2	0.8463
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10028859 [exp]	9.8	0.8457
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10021797 [exp]	11.2	0.8012
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008023 [exp]	11.8	0.8214
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	12.8	0.8243
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019447 [exp]	13.6	0.8363
AT1G16810			unknown protein		Lus10033383 [exp]	14.8	0.8201
AT4G07390			Mannose-P-dolichol utilization...		Lus10021350 [exp]	16.5	0.8207
					Lus10040104 [exp]	16.6	0.7927

Compare expression of checked genes

Lus10028587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.