Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80260 889 / 0 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G20570 819 / 0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT5G06680 71 / 3e-12 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT3G43610 68 / 2e-11 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT3G53760 61 / 3e-09 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT5G17410 57 / 8e-08 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018892 [exp] 1579 / 0 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028670 [exp] 127 / 1e-32 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10029779 [exp] 62 / 2e-09 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10016246 [exp] 57 / 6e-08 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10042807 [exp] 52 / 2e-06 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10003353 [exp] 41 / 0.0004 AT3G43610 136 / 2e-38 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G000100 [exp] 382 / 4e-119 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.014G184701 [exp] 319 / 5e-103 AT1G80260 358 / 4e-118 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.014G184801 [exp] 309 / 3e-98 AT1G80260 321 / 8e-103 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.010G180700 [exp] 64 / 3e-10 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.006G194200 [exp] 60 / 6e-09 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.016G059900 [exp] 59 / 1e-08 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.014G128400 [exp] 57 / 4e-08 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.009G153300 [exp] 57 / 7e-08 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10028588 pacid=23164584 polypeptide=Lus10028588 locus=Lus10028588.g ID=Lus10028588.BGIv1.0 annot-version=v1.0 ATGTCACTTCAGACGGCGACTCCGTTAACCCTCGGCGAAGGCATACACTACGCAACTCCAGTAATCCCCAGCTCCACCACCACCGAATCAGAAATCGTCC GATCAGTACTTCAGATGCTGCAAGGATTTTCCCTCTCACCAGGCTCACTCTTCCGCTGGGATTCAAATGCGCGATCGTTCCGCGTTTCACAGCCTGGGAT TTACCTCACTCACCTCTCCCGCTCAAGCCTTCACAACCTCCTGCATCAGTTCTTGTATGCAGCTAGTTGCTTGCAGCTTGTGGAGACCTCGCTGGATAAG CTGAGATCCCACCAGGGTGGTTTTTGTAAATTGCCTACTTTGAGTGCTTTTGTGAATTCTGCTTCTTGTTGGCTTAAGAGGTTGAGGGATGTTGCTTTGG ATGAGGAGATGAAGGTTTGTAATTCAAGTGTTGAAGTCACCCCAACTTTGTTGGGTTTATCCAGTTCTTTGTCAAGGTTAGTCCTTTTCTCAGTGTGGCA TCAACTAAAGGTTAAAACTAATGGTGGTGCTGAGTATCTAATGCAAACTGTGCAAGGAGCTGTTCCCCGAGAATGTTTCGAGCCAGGTTCGTCTATTTCA GCTGCTGAAGTGGCAGTTCACATTCTTGATTATCTTTACAAGAAGCTGGATGAAGTTTGTCTTGTGGAAGGTGGTGAGGAAGAAGCATATAGGATGGTGC TTCATATGCTTGTTGCGAGCCTATTGCCGTACATTGAATCCCTCGATTCCTGGCTTTTCGAAGGAATACTTGATGATCCTTGTGAGGAGATGTTCTTCTA TGCTAATGGAGTAATCTCAATTGACGATTCTGTGTTCTGGGAGAAGAGCTATCAGTTGAGACAGGAGCAATATCTCGAGAATCCAATGCTCGGTTCTGCT GTACCACCGATGAAGGGGAAGAAGGACAAGAAAAGGCTTCATGTTTGCCCTTTGTTTATTACTGATATGGCAAAGGCAATTGTCTCTGCAGGCAAATCAT TGCAGTTGATTCGTCATGTACCTTCATCAGCTTCATGTCCCTCGATCTCCACTAAAAGTTCCAGGAGTCGTCTTATAAGCTATGAGAGCATATCATGCTT AACTTTGTCAGAAATTTTCTGTGTATCAGTTGCAGGGCTTGTTGGCCATGGTGATCATGCCTATAAGTACTTGTTAGATGACATAAGCCAATCGAGCATT ACATCCACTTCGGTTTGCTCGGAAAAGGTTTGGTATAGGTTCATGTTGGATGCCTTGCAGCAGAAGAAAGTAACCGATCCGAGTTCGTCATTCTGTCCAG AAAATCCGGTTTTAACTGCAAGTCAAGCTTTGCTCGAGACACATAAAGAGTCATGGAGTACATTGAACTTGTCAAGCAAGTTATCTCTGCCTCCTTTGAA CGATGAAGCCTTGTGTGAGGCTGTATTTGGTGGAAAGAACGAGTCTTTTCCAAATTTCCGAGGAACAAACTACGCCCTTGGTTTTTGTCACAGCGAATCT GAATATGTTCGTTCTGTTAACGAGAGAGAGCTGTTAAAAGTCTTATTTCCTTTCCCTACAGTTCTTCCTACCTTCCAGGAAGATGACCCGATTTCAGATC ACTTGCCCTTCCAGAAAAACAGCACACTTCCTTCTAGGGTTCTTCAGTGGATTCAAGATGTTGAACTGAGAAGCAATTCACACCCTGTAGTTATCATGCA GGAATGCTTATATGTATACATCAAAAAGCAGGTGGATTGTGTTGGCAGAATGGTGTTGTCAAAGTTGATGAATGAGTGGAGATTGATGGACGAGCTTGCG ATATTACGCGCTATTTACTTGTTAGGTTCAGGCGATTTACTGCAGCACTTTTCGACCATAATTTTCGATAAGCTAGATAAGGGAGAGACCTGGGACGATG AATTCGAGCTCAACACTGTATTACAGGAATCCATTAGGAACTCGGCAGACGGGAATCTACTTAACTCTACAGATTCGTTAGTTGTCACCATTACAAAGAG TAACGGTTTGGATGGTGATGAGCGGAGCTCAACTCGCAGAAGTAATCCTCACACCTCCGGATTAGACGCCCTTGCTTCATTGAACTTCACATACAAGGTT TCGTGGCCATTGGAACTCATTGCGAATGCAGAAGTCATTAAGAAGTACAACCAGGTGATGACTTTCTTGTTGAAGGTTAAGCGAGTGAAGTCCGTACTTG ATAAAGTCCGGAAGTGGATGTGGAAGAGTAAAGGCAGAGTGATGAGAAACAGCTCGAAACGTCACTGGTTGGTGGAGCAAAAACTGCTCCATTTCGTTGA CGCTTTCCACCAACATGTCATGGACGGAGTATATCACAGTGCATGGCGCGAGCTCTGCGAAGGTATGGCCGCAGCAGGCTCTCTCGACGAAGTCATGGAA GTACACGAAGCTTACCTACTATCGATTCAGCGCCAATGCTTTGTCGTTCCAGGAAAGCTGTGGTCTGTGATTGCGAGTCGAATCAACCGGATCCTCAATC TAGCTCTGGACTTCTACACCATACAGCAGACTTTAGACAGTGACGAAACGATGAAGGCCAAGTGTGAAGCGACAGTGGAACAGATCGAGAAATCCTTTGA CGACTGCATTGCTGTTCTTCTGAGAGTACTATCTGTCAAAGTGAATGTGAAGCACTTCCCTCATCTGGCTGATTTGGTTGCTAGAATCAACTATAACTAC TTTTACGTGTCCGACAACGGTACCTTGAAGACTAACACGAGCTCCGGTGCTGCCACTTTGAGAATCGGGAAGGTTTAG
AA sequence Show only first row Show all	>Lus10028588 pacid=23164584 polypeptide=Lus10028588 locus=Lus10028588.g ID=Lus10028588.BGIv1.0 annot-version=v1.0 MSLQTATPLTLGEGIHYATPVIPSSTTTESEIVRSVLQMLQGFSLSPGSLFRWDSNARSFRVSQPGIYLTHLSRSSLHNLLHQFLYAASCLQLVETSLDK LRSHQGGFCKLPTLSAFVNSASCWLKRLRDVALDEEMKVCNSSVEVTPTLLGLSSSLSRLVLFSVWHQLKVKTNGGAEYLMQTVQGAVPRECFEPGSSIS AAEVAVHILDYLYKKLDEVCLVEGGEEEAYRMVLHMLVASLLPYIESLDSWLFEGILDDPCEEMFFYANGVISIDDSVFWEKSYQLRQEQYLENPMLGSA VPPMKGKKDKKRLHVCPLFITDMAKAIVSAGKSLQLIRHVPSSASCPSISTKSSRSRLISYESISCLTLSEIFCVSVAGLVGHGDHAYKYLLDDISQSSI TSTSVCSEKVWYRFMLDALQQKKVTDPSSSFCPENPVLTASQALLETHKESWSTLNLSSKLSLPPLNDEALCEAVFGGKNESFPNFRGTNYALGFCHSES EYVRSVNERELLKVLFPFPTVLPTFQEDDPISDHLPFQKNSTLPSRVLQWIQDVELRSNSHPVVIMQECLYVYIKKQVDCVGRMVLSKLMNEWRLMDELA ILRAIYLLGSGDLLQHFSTIIFDKLDKGETWDDEFELNTVLQESIRNSADGNLLNSTDSLVVTITKSNGLDGDERSSTRRSNPHTSGLDALASLNFTYKV SWPLELIANAEVIKKYNQVMTFLLKVKRVKSVLDKVRKWMWKSKGRVMRNSSKRHWLVEQKLLHFVDAFHQHVMDGVYHSAWRELCEGMAAAGSLDEVME VHEAYLLSIQRQCFVVPGKLWSVIASRINRILNLALDFYTIQQTLDSDETMKAKCEATVEQIEKSFDDCIAVLLRVLSVKVNVKHFPHLADLVARINYNY FYVSDNGTLKTNTSSGAATLRIGKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	0	1
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	2.0	0.8160
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	4.7	0.8069
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	6.3	0.7853
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	8.7	0.8043
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	11.0	0.7634
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	12.7	0.7716
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	13.6	0.7850
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	13.6	0.7814
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	14.7	0.8015
AT2G29200		APUM1	pumilio 1 (.1)		Lus10002708 [exp]	20.0	0.7389

Compare expression of checked genes

Lus10028588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.