Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35780 488 / 2e-167 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 472 / 2e-161 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 470 / 2e-160 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 249 / 7e-77 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 243 / 1e-74 Protein kinase superfamily protein (.1) AT1G62400 241 / 1e-74 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G49470 232 / 2e-69 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT5G58950 226 / 5e-67 Protein kinase superfamily protein (.1) AT1G67890 231 / 1e-66 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT1G18160 233 / 2e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018895 [exp] 1025 / 0 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 472 / 1e-160 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 464 / 9e-158 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10041845 [exp] 435 / 8e-147 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 431 / 2e-146 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 453 / 6e-145 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10004153 [exp] 419 / 3e-132 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 342 / 2e-111 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 278 / 5e-88 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G190200 [exp] 749 / 0 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 741 / 0 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 495 / 3e-170 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 482 / 4e-165 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 471 / 1e-160 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 462 / 2e-157 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 461 / 1e-156 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 449 / 1e-152 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 440 / 6e-151 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 403 / 7e-136 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10028590 pacid=23164580 polypeptide=Lus10028590 locus=Lus10028590.g ID=Lus10028590.BGIv1.0 annot-version=v1.0 ATGGATTTCACAGAAGGAGTTGGAGAGAGCTCGTCTCCGCCGAGGAGCTACGGGACCTTCAACAGCAGCTACGAGGTGAGGAACGACGTCTTCAATCGCT TGATTGAGAATGGCTACGGCGACGCCGCCTCCAACCCCGAGCTCTTCCGCTCCTTGCTTGATGCTCATTTCAACCGCCTTCCTGCTAGTTATGGTCTTGA TGTCAACATGGATAGAGTCGAAGATATTTTGGTGCATCAGAAGCTATTAGAGAAGGCAGGGGATCCGGAGGAGCGTCCTGCTTACCATGTTCGTTTCATA GAGAGTCTTTGCATGGCTTCAAATGGAAATAGTGATGAACAAAATTCAGGCTCAGTGGCTGTGTTAAACCGAGAAGATGGAGTAGGTTCTCCAACACTCA AGAGAGTCAGGGACTCTGGAGTTGATTTTGAAGCATGCTCTAAACTTGAGGATCTGAATTTGGAAAAGACTTCCAAGGAAATGGTGGATAAATATCAGTT GGAGGACCTTTTGAAACGGGAAGAATCAGTTAAGGTTCCAATACATGAAGTAATATTTTCTACCATTGATAAGCCAAAGCTTCTTAGTCAGCTTTCATCA CTGCTATCTGATATAGGATTGAATATCCGTGAGGCTCATGTATTCTCGACGATCGATGGTTACTCTTTGGATGTATTTGTGGTAGATGGATGGCCAGTTG AGGAAACAGAAGGTTTGACTGAAGCAATGGGAAAAGCAATTGCGAGAAGTGAGGGTTCATGGTCTGGTTCTTCACATGGTCATTTGGCTATCGGGAGATC GTCAGCCCAGGAAACATCTAGAGATTGGGAAATAGACCGAAGATTGTTGACGCTAGAAGAAAGAATTGCTTCTGGATTCTATGGAGATTTGTACCATGGA GTTTACCTTGGTCAACATGTTGCTATCAAAATTCTAAGATCTGAGCATTTAACTGTTTCACAACTAGATGAATTCTCTCAAGAAGTGGCAATTCTAAGGG AGGTCCAACATGTAAATGTTGTCCGGTTCATTGGTGCATGTACCAAATCTCCACATTTACGCATTGTAACAGAGTATATGCCTGGAGGGAACCTCTATGA TTACTTGCACAGGAACCACGGCACATTGAAGCTTTCCCAATTACTCAAGTTTGCAATAGATGTTAGCAAAGGCATGGAATATTTGCACCAAAACAACATA ATTCACAGGGATTTGAAGACAGCAAACTTGTTGATGGACGCAGACTATGTTGTCAAGGTAGCCGATTTTGGGGTAGCCCGATTCCAGAACCAAGATGGAG TGATGACAGCAGAGACTGGGACATACAGATGGATGGCCCCTGAGGTTATAAACCACGAACCATACGATCAGAAAGCAGACGTCTTCAGTTTTGCTATTGT ATTGTGGGAATTGGTCACTGCTAAGGTGCCTTATGAGACCTTGACTCCCCTGCAAGCTGCACTGGGAGTTAGACAGGGGCAACGCCCAGAGCTTCCCCAG AACTTGCATCCAGGGTTGTTAAACCTAATGCAGAGATGTTGGGAAACAGATCCGGTCAATAGGCCTCCCTTCTCGGAGATAACAGTCGAGTTGGAAAGAC TCCTGGAAGAAATCCAGATTGGTCGGAGAAACTTACAAGCAATTGCAGTGTGTGGAGGCGGGGACAAGCATTTATCAAAGCAACCAACCAGGTATTCTAC AATTCCCGGCAATAACGTGGACCGTTAG
AA sequence Show only first row Show all	>Lus10028590 pacid=23164580 polypeptide=Lus10028590 locus=Lus10028590.g ID=Lus10028590.BGIv1.0 annot-version=v1.0 MDFTEGVGESSSPPRSYGTFNSSYEVRNDVFNRLIENGYGDAASNPELFRSLLDAHFNRLPASYGLDVNMDRVEDILVHQKLLEKAGDPEERPAYHVRFI ESLCMASNGNSDEQNSGSVAVLNREDGVGSPTLKRVRDSGVDFEACSKLEDLNLEKTSKEMVDKYQLEDLLKREESVKVPIHEVIFSTIDKPKLLSQLSS LLSDIGLNIREAHVFSTIDGYSLDVFVVDGWPVEETEGLTEAMGKAIARSEGSWSGSSHGHLAIGRSSAQETSRDWEIDRRLLTLEERIASGFYGDLYHG VYLGQHVAIKILRSEHLTVSQLDEFSQEVAILREVQHVNVVRFIGACTKSPHLRIVTEYMPGGNLYDYLHRNHGTLKLSQLLKFAIDVSKGMEYLHQNNI IHRDLKTANLLMDADYVVKVADFGVARFQNQDGVMTAETGTYRWMAPEVINHEPYDQKADVFSFAIVLWELVTAKVPYETLTPLQAALGVRQGQRPELPQ NLHPGLLNLMQRCWETDPVNRPPFSEITVELERLLEEIQIGRRNLQAIAVCGGGDKHLSKQPTRYSTIPGNNVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10028590 [exp]	0	1
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10018895 [exp]	2.0	0.9047
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	2.0	0.9091
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	4.2	0.8591
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	8.8	0.8396
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	10.6	0.7798
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	12.6	0.8309
AT5G49820		RUS6, EMB1879	ROOT UV-B SENSITIVE 6, Protein...		Lus10038136 [exp]	13.4	0.8288
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	14.5	0.8186
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	15.5	0.8378
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	15.7	0.8443

Compare expression of checked genes

Lus10028590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.